Description : Pm52 protein
Gene families : OG_02_0013682 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011227 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_256 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000245 | spliceosomal complex assembly | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000315 | organellar large ribosomal subunit | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000338 | protein deneddylation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000339 | RNA cap binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000340 | RNA 7-methylguanosine cap binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000387 | spliceosomal snRNP assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000785 | chromatin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000966 | RNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000967 | rRNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001091 | RNA polymerase II general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001093 | TFIIB-class transcription factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001510 | RNA methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0001650 | fibrillar center | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001837 | epithelial to mesenchymal transition | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005048 | signal sequence binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005527 | macrolide binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005528 | FK506 binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005654 | nucleoplasm | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005682 | U5 snRNP | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005683 | U7 snRNP | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005685 | U1 snRNP | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005686 | U2 snRNP | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005687 | U4 snRNP | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005689 | U12-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005697 | telomerase holoenzyme complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005730 | nucleolus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005762 | mitochondrial large ribosomal subunit | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005845 | mRNA cap binding complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005846 | nuclear cap binding complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005884 | actin filament | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006325 | chromatin organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006334 | nucleosome assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006337 | nucleosome disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006338 | chromatin remodeling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006364 | rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006379 | mRNA cleavage | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006408 | snRNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006446 | regulation of translational initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006997 | nucleus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007000 | nucleolus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007282 | cystoblast division | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008139 | nuclear localization sequence binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008156 | negative regulation of DNA replication | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0008180 | COP9 signalosome | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009413 | response to flooding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010027 | thylakoid membrane organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010197 | polar nucleus fusion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010387 | COP9 signalosome assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010507 | negative regulation of autophagy | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014029 | neural crest formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014032 | neural crest cell development | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0015030 | Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016241 | regulation of macroautophagy | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016242 | negative regulation of macroautophagy | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016444 | somatic cell DNA recombination | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0017069 | snRNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019336 | phenol-containing compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019827 | stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030515 | snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030519 | snoRNP binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030718 | germ-line stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031053 | primary miRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031167 | rRNA methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031312 | extrinsic component of organelle membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031428 | box C/D RNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031429 | box H/ACA snoRNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031440 | regulation of mRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031442 | positive regulation of mRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032239 | regulation of nucleobase-containing compound transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032241 | positive regulation of nucleobase-containing compound transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032386 | regulation of intracellular transport | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0032977 | membrane insertase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032986 | protein-DNA complex disassembly | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033218 | amide binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033313 | meiotic cell cycle checkpoint signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033979 | box H/ACA RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034399 | nuclear periphery | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034471 | ncRNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034512 | box C/D RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034513 | box H/ACA snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034518 | RNA cap binding complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034709 | methylosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034715 | pICln-Sm protein complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034719 | SMN-Sm protein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034728 | nucleosome organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035196 | miRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035626 | juvenile hormone mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036099 | female germ-line stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036260 | RNA capping | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040020 | regulation of meiotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042303 | molting cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042306 | regulation of protein import into nucleus | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0042393 | histone binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042406 | extrinsic component of endoplasmic reticulum membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042633 | hair cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043186 | P granule | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045048 | protein insertion into ER membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045050 | protein insertion into ER membrane by stop-transfer membrane-anchor sequence | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045069 | regulation of viral genome replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045071 | negative regulation of viral genome replication | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0045111 | intermediate filament cytoskeleton | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045446 | endothelial cell differentiation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0045544 | gibberellin 20-oxidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045835 | negative regulation of meiotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046244 | salicylic acid catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046822 | regulation of nucleocytoplasmic transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046824 | positive regulation of nucleocytoplasmic transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046831 | regulation of RNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046833 | positive regulation of RNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046982 | protein heterodimerization activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048138 | germ-line cyst encapsulation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048140 | male germ-line cyst encapsulation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048142 | germarium-derived cystoblast division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048525 | negative regulation of viral process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048762 | mesenchymal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048864 | stem cell development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050685 | positive regulation of mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051030 | snRNA transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051205 | protein insertion into membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051447 | negative regulation of meiotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051598 | meiotic recombination checkpoint signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051784 | negative regulation of nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060216 | definitive hemopoiesis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0062064 | box C/D snoRNP complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0062065 | box H/ACA snoRNP complex binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070475 | rRNA base methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070594 | juvenile hormone response element binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071004 | U2-type prespliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071005 | U2-type precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071007 | U2-type catalytic step 2 spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071010 | prespliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071816 | tail-anchored membrane protein insertion into ER membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0072546 | EMC complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0072588 | box H/ACA RNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097064 | ncRNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098727 | maintenance of cell number | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098787 | mRNA cleavage involved in mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098789 | pre-mRNA cleavage required for polyadenylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140597 | protein carrier chaperone | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903900 | regulation of viral life cycle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990935 | splicing factor binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000232 | regulation of rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000234 | positive regulation of rRNA processing | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |