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Description : Pentatricopeptide repeat-containing protein, putative
Gene families : OG_02_0008467 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011240 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_229 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003006 | developmental process involved in reproduction | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | IEA | AHRD |
| MF | GO:0005488 | binding | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| BP | GO:0006412 | translation | IEA | AHRD |
| BP | GO:0006518 | peptide metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0007165 | signal transduction | IEA | AHRD |
| BP | GO:0007275 | multicellular organism development | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009058 | biosynthetic process | None | Extended |
| BP | GO:0009059 | macromolecule biosynthetic process | None | Extended |
| CC | GO:0009295 | nucleoid | None | Extended |
| CC | GO:0009532 | plastid stroma | None | Extended |
| CC | GO:0009570 | chloroplast stroma | IEA | AHRD |
| BP | GO:0009790 | embryo development | None | Extended |
| BP | GO:0009793 | embryo development ending in seed dormancy | IEA | AHRD |
| BP | GO:0009893 | positive regulation of metabolic process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010468 | regulation of gene expression | IEA | AHRD |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEA | AHRD |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0019222 | regulation of metabolic process | None | Extended |
| BP | GO:0019538 | protein metabolic process | None | Extended |
| BP | GO:0022414 | reproductive process | None | Extended |
| BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
| BP | GO:0032501 | multicellular organismal process | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | None | Extended |
| CC | GO:0042646 | plastid nucleoid | IEA | AHRD |
| BP | GO:0043043 | peptide biosynthetic process | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043228 | non-membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | None | Extended |
| BP | GO:0043603 | cellular amide metabolic process | None | Extended |
| BP | GO:0043604 | amide biosynthetic process | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0044249 | cellular biosynthetic process | None | Extended |
| BP | GO:0044260 | cellular macromolecule metabolic process | None | Extended |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | None | Extended |
| BP | GO:0048518 | positive regulation of biological process | None | Extended |
| BP | GO:0048856 | anatomical structure development | None | Extended |
| BP | GO:0050789 | regulation of biological process | None | Extended |
| BP | GO:0050794 | regulation of cellular process | None | Extended |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051252 | regulation of RNA metabolic process | IEA | AHRD |
| BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0065007 | biological regulation | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | None | Extended |
| BP | GO:1901576 | organic substance biosynthetic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000373 | Group II intron splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000460 | maturation of 5.8S rRNA | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000719 | photoreactive repair | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003677 | DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003904 | deoxyribodipyrimidine photo-lyase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003913 | DNA photolyase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004518 | nuclease activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0005983 | starch catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006290 | pyrimidine dimer repair | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006351 | DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006390 | mitochondrial transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008219 | cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009451 | RNA modification | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009507 | chloroplast | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009508 | plastid chromosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009536 | plastid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009638 | phototropism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009649 | entrainment of circadian clock | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009657 | plastid organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009658 | chloroplast organization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009707 | chloroplast outer membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009720 | detection of hormone stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009722 | detection of cytokinin stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009726 | detection of endogenous stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009727 | detection of ethylene stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009785 | blue light signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009836 | fruit ripening, climacteric | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0009881 | photoreceptor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0009882 | blue light photoreceptor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009911 | positive regulation of flower development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010020 | chloroplast fission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010112 | regulation of systemic acquired resistance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010117 | photoprotection | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010239 | chloroplast mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010310 | regulation of hydrogen peroxide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010343 | singlet oxygen-mediated programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010497 | plasmodesmata-mediated intercellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010617 | circadian regulation of calcium ion oscillation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0012501 | programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016073 | snRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016180 | snRNA processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016308 | 1-phosphatidylinositol-4-phosphate 5-kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016556 | mRNA modification | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016605 | PML body | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016781 | phosphotransferase activity, paired acceptors | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018106 | peptidyl-histidine phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018202 | peptidyl-histidine modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018298 | obsolete protein-chromophore linkage | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022411 | cellular component disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031125 | rRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031312 | extrinsic component of organelle membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031425 | chloroplast RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034245 | mitochondrial DNA-directed RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034472 | snRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034762 | regulation of transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034764 | positive regulation of transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034765 | regulation of ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034767 | positive regulation of ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0035452 | extrinsic component of plastid membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036473 | cell death in response to oxidative stress | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042644 | chloroplast nucleoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042645 | mitochondrial nucleoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042793 | plastid transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043153 | entrainment of circadian clock by photoperiod | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043268 | positive regulation of potassium ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043269 | regulation of ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043270 | positive regulation of ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043572 | plastid fission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043628 | small regulatory ncRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043633 | polyadenylation-dependent RNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044247 | cellular polysaccharide catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048564 | photosystem I assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048574 | long-day photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048582 | positive regulation of post-embryonic development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0050521 | alpha-glucan, water dikinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051050 | positive regulation of transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051480 | regulation of cytosolic calcium ion concentration | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051606 | detection of stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060968 | obsolete regulation of gene silencing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071000 | response to magnetism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071369 | cellular response to ethylene stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071483 | cellular response to blue light | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0071949 | FAD binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072387 | flavin adenine dinucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072583 | clathrin-dependent endocytosis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080112 | seed growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090503 | RNA phosphodiester bond hydrolysis, exonucleolytic | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097468 | programmed cell death in response to reactive oxygen species | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0102216 | maltodextrin water dikinase | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0102218 | starch, H2O dikinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900618 | regulation of shoot system morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901259 | chloroplast rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901371 | regulation of leaf morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901379 | regulation of potassium ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901381 | positive regulation of potassium ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901529 | positive regulation of anion channel activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901672 | positive regulation of systemic acquired resistance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902347 | response to strigolactone | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902446 | regulation of shade avoidance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902448 | positive regulation of shade avoidance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903008 | organelle disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903286 | regulation of potassium ion import | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903288 | positive regulation of potassium ion import across plasma membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903338 | regulation of cell wall organization or biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903793 | positive regulation of anion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903961 | positive regulation of anion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904821 | chloroplast disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000243 | positive regulation of reproductive process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000379 | positive regulation of reactive oxygen species metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000652 | regulation of secondary cell wall biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 821 | 863 |
| IPR002885 | Pentatricopeptide_repeat | 1067 | 1095 |
| IPR002885 | Pentatricopeptide_repeat | 927 | 955 |
| IPR002885 | Pentatricopeptide_repeat | 1103 | 1130 |
| IPR002885 | Pentatricopeptide_repeat | 961 | 990 |
| IPR002885 | Pentatricopeptide_repeat | 895 | 919 |
| IPR002885 | Pentatricopeptide_repeat | 715 | 744 |
| IPR002885 | Pentatricopeptide_repeat | 402 | 432 |
| IPR002885 | Pentatricopeptide_repeat | 1137 | 1165 |
| IPR002885 | Pentatricopeptide_repeat | 259 | 303 |
| IPR002885 | Pentatricopeptide_repeat | 329 | 374 |
| IPR002885 | Pentatricopeptide_repeat | 996 | 1041 |
| IPR002885 | Pentatricopeptide_repeat | 507 | 549 |
| IPR002885 | Pentatricopeptide_repeat | 434 | 482 |
| IPR002885 | Pentatricopeptide_repeat | 508 | 540 |
| IPR002885 | Pentatricopeptide_repeat | 332 | 365 |
| IPR002885 | Pentatricopeptide_repeat | 961 | 993 |
| IPR002885 | Pentatricopeptide_repeat | 261 | 293 |
| IPR002885 | Pentatricopeptide_repeat | 821 | 853 |
| IPR002885 | Pentatricopeptide_repeat | 368 | 401 |
| IPR002885 | Pentatricopeptide_repeat | 402 | 433 |
| IPR002885 | Pentatricopeptide_repeat | 1137 | 1168 |
| IPR002885 | Pentatricopeptide_repeat | 715 | 747 |
| IPR002885 | Pentatricopeptide_repeat | 438 | 471 |
| IPR002885 | Pentatricopeptide_repeat | 472 | 506 |
| IPR002885 | Pentatricopeptide_repeat | 996 | 1027 |
| IPR002885 | Pentatricopeptide_repeat | 926 | 958 |
| IPR002885 | Pentatricopeptide_repeat | 1067 | 1098 |
| IPR002885 | Pentatricopeptide_repeat | 1031 | 1063 |
| No external refs found! |
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