Coexpression cluster: Cluster_229 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0061927 TOC-TIC supercomplex I 4.71% (4/85) 8.04 0.0 1e-06
GO:0005488 binding 78.82% (67/85) 0.65 0.0 4.4e-05
GO:0009987 cellular process 77.65% (66/85) 0.57 1e-06 0.000289
GO:0045037 protein import into chloroplast stroma 4.71% (4/85) 5.72 1e-06 0.0003
GO:1901363 heterocyclic compound binding 49.41% (42/85) 1.0 1e-06 0.000319
GO:0097159 organic cyclic compound binding 49.41% (42/85) 0.99 1e-06 0.000324
GO:0031047 gene silencing by RNA 8.24% (7/85) 3.66 1e-06 0.000334
GO:0048856 anatomical structure development 43.53% (37/85) 1.13 1e-06 0.000338
GO:0003674 molecular_function 84.71% (72/85) 0.5 1e-06 0.000376
GO:0008150 biological_process 84.71% (72/85) 0.46 3e-06 0.000537
GO:0080188 gene silencing by RNA-directed DNA methylation 4.71% (4/85) 5.06 7e-06 0.000736
GO:0072598 protein localization to chloroplast 4.71% (4/85) 5.06 7e-06 0.000736
GO:0090304 nucleic acid metabolic process 24.71% (21/85) 1.58 4e-06 0.000741
GO:0045036 protein targeting to chloroplast 4.71% (4/85) 5.09 6e-06 0.000769
GO:0072596 establishment of protein localization to chloroplast 4.71% (4/85) 5.09 6e-06 0.000769
GO:0031326 regulation of cellular biosynthetic process 30.59% (26/85) 1.3 8e-06 0.000805
GO:0006139 nucleobase-containing compound metabolic process 27.06% (23/85) 1.42 8e-06 0.000812
GO:0110165 cellular anatomical entity 82.35% (70/85) 0.45 9e-06 0.000817
GO:0010605 negative regulation of macromolecule metabolic process 22.35% (19/85) 1.62 9e-06 0.000829
GO:0060255 regulation of macromolecule metabolic process 35.29% (30/85) 1.16 9e-06 0.000836
GO:0003676 nucleic acid binding 34.12% (29/85) 1.23 5e-06 0.000844
GO:0031323 regulation of cellular metabolic process 36.47% (31/85) 1.16 5e-06 0.000858
GO:0080090 regulation of primary metabolic process 35.29% (30/85) 1.18 6e-06 0.000876
GO:0009892 negative regulation of metabolic process 23.53% (20/85) 1.55 1.1e-05 0.000891
GO:0043170 macromolecule metabolic process 43.53% (37/85) 0.96 1.1e-05 0.00092
GO:0048519 negative regulation of biological process 34.12% (29/85) 1.15 1.4e-05 0.001004
GO:0016781 phosphotransferase activity, paired acceptors 2.35% (2/85) 8.26 1.4e-05 0.001015
GO:0010468 regulation of gene expression 30.59% (26/85) 1.26 1.4e-05 0.00103
GO:0009889 regulation of biosynthetic process 30.59% (26/85) 1.26 1.3e-05 0.001051
GO:0010385 double-stranded methylated DNA binding 3.53% (3/85) 5.91 1.7e-05 0.001152
GO:0005575 cellular_component 82.35% (70/85) 0.43 1.8e-05 0.001199
GO:0051252 regulation of RNA metabolic process 25.88% (22/85) 1.39 2e-05 0.001216
GO:0010556 regulation of macromolecule biosynthetic process 27.06% (23/85) 1.34 1.9e-05 0.001235
GO:0019219 regulation of nucleobase-containing compound metabolic process 27.06% (23/85) 1.33 2.3e-05 0.001251
GO:0032502 developmental process 48.24% (41/85) 0.84 2.4e-05 0.001267
GO:0006346 DNA methylation-dependent heterochromatin formation 4.71% (4/85) 4.62 2.2e-05 0.001269
GO:0006807 nitrogen compound metabolic process 49.41% (42/85) 0.82 2.2e-05 0.001269
GO:0019222 regulation of metabolic process 38.82% (33/85) 1.01 2.2e-05 0.001296
GO:0010495 siRNA-mediated long-distance post-transcriptional gene silencing 2.35% (2/85) 7.85 2.8e-05 0.001455
GO:0034641 cellular nitrogen compound metabolic process 30.59% (26/85) 1.17 4.1e-05 0.002097
GO:0051171 regulation of nitrogen compound metabolic process 31.76% (27/85) 1.13 4.5e-05 0.002233
GO:0140718 facultative heterochromatin formation 4.71% (4/85) 4.34 4.8e-05 0.002329
GO:0031048 small non-coding RNA-dependent heterochromatin formation 4.71% (4/85) 4.29 5.5e-05 0.002582
GO:0006396 RNA processing 15.29% (13/85) 1.82 7.1e-05 0.003083
GO:0005515 protein binding 58.82% (50/85) 0.64 7.1e-05 0.003142
GO:0090625 siRNA-mediated gene silencing by mRNA destabilization 2.35% (2/85) 7.26 7e-05 0.003144
GO:0140766 siRNA-mediated gene silencing 2.35% (2/85) 7.26 7e-05 0.003144
GO:0046872 metal ion binding 25.88% (22/85) 1.26 7.5e-05 0.003167
GO:0009890 negative regulation of biosynthetic process 15.29% (13/85) 1.8 8.1e-05 0.003368
GO:0031380 nuclear RNA-directed RNA polymerase complex 2.35% (2/85) 7.04 9.7e-05 0.003956
GO:0009527 plastid outer membrane 4.71% (4/85) 4.06 0.000101 0.004015
GO:0043169 cation binding 25.88% (22/85) 1.23 0.000105 0.004108
GO:0032501 multicellular organismal process 35.29% (30/85) 0.97 0.000109 0.004193
GO:0065002 intracellular protein transmembrane transport 4.71% (4/85) 4.02 0.000112 0.004208
GO:0043167 ion binding 35.29% (30/85) 0.96 0.000128 0.004624
GO:0048523 negative regulation of cellular process 25.88% (22/85) 1.21 0.000127 0.004694
GO:0010558 negative regulation of macromolecule biosynthetic process 14.12% (12/85) 1.82 0.000143 0.005104
GO:0060429 epithelium development 4.71% (4/85) 3.9 0.000155 0.005433
GO:0031968 organelle outer membrane 5.88% (5/85) 3.28 0.000174 0.005508
GO:2001141 regulation of RNA biosynthetic process 22.35% (19/85) 1.31 0.000171 0.005511
GO:0031379 RNA-directed RNA polymerase complex 2.35% (2/85) 6.68 0.000167 0.005544
GO:0006397 mRNA processing 8.24% (7/85) 2.6 0.000164 0.005559
GO:1903506 regulation of nucleic acid-templated transcription 22.35% (19/85) 1.31 0.00017 0.005559
GO:0006355 regulation of DNA-templated transcription 22.35% (19/85) 1.31 0.000164 0.00563
GO:0019867 outer membrane 5.88% (5/85) 3.27 0.000181 0.005638
GO:0046483 heterocycle metabolic process 28.24% (24/85) 1.1 0.000184 0.005664
GO:0010629 negative regulation of gene expression 10.59% (9/85) 2.14 0.000212 0.00641
GO:0071806 protein transmembrane transport 4.71% (4/85) 3.78 0.000216 0.006437
GO:0044238 primary metabolic process 50.59% (43/85) 0.67 0.000254 0.007487
GO:0031327 negative regulation of cellular biosynthetic process 14.12% (12/85) 1.72 0.00026 0.007554
GO:0070828 heterochromatin organization 4.71% (4/85) 3.68 0.000284 0.007891
GO:0031507 heterochromatin formation 4.71% (4/85) 3.69 0.000276 0.0079
GO:0016071 mRNA metabolic process 10.59% (9/85) 2.08 0.000281 0.007918
GO:0043412 macromolecule modification 25.88% (22/85) 1.11 0.000333 0.009005
GO:0043229 intracellular organelle 58.82% (50/85) 0.56 0.000331 0.009082
GO:0050794 regulation of cellular process 47.06% (40/85) 0.69 0.000369 0.009858
GO:0045814 negative regulation of gene expression, epigenetic 4.71% (4/85) 3.55 0.000394 0.01012
GO:0048522 positive regulation of cellular process 28.24% (24/85) 1.03 0.00039 0.010152
GO:0043226 organelle 58.82% (50/85) 0.55 0.000388 0.01023
GO:0001172 RNA-templated transcription 2.35% (2/85) 6.04 0.000418 0.010609
GO:0031331 positive regulation of cellular catabolic process 7.06% (6/85) 2.64 0.000426 0.010681
GO:0016070 RNA metabolic process 16.47% (14/85) 1.46 0.000486 0.01161
GO:1903286 regulation of potassium ion import 2.35% (2/85) 5.94 0.000482 0.011642
GO:1903288 positive regulation of potassium ion import across plasma membrane 2.35% (2/85) 5.94 0.000482 0.011642
GO:0031324 negative regulation of cellular metabolic process 16.47% (14/85) 1.47 0.000478 0.011831
GO:0051172 negative regulation of nitrogen compound metabolic process 16.47% (14/85) 1.44 0.000559 0.01319
GO:0006725 cellular aromatic compound metabolic process 29.41% (25/85) 0.96 0.00057 0.013291
GO:0008285 negative regulation of cell population proliferation 5.88% (5/85) 2.83 0.000714 0.016467
GO:0048731 system development 10.59% (9/85) 1.89 0.000739 0.016865
GO:0010218 response to far red light 4.71% (4/85) 3.3 0.000759 0.017123
GO:0048518 positive regulation of biological process 31.76% (27/85) 0.88 0.000801 0.017872
GO:0050779 RNA destabilization 3.53% (3/85) 3.99 0.000922 0.020125
GO:0061157 mRNA destabilization 3.53% (3/85) 3.99 0.000922 0.020125
GO:0032515 negative regulation of phosphoprotein phosphatase activity 2.35% (2/85) 5.45 0.000955 0.020415
GO:0006338 chromatin remodeling 5.88% (5/85) 2.74 0.000946 0.020425
GO:0071704 organic substance metabolic process 54.12% (46/85) 0.55 0.000967 0.020439
GO:0007165 signal transduction 22.35% (19/85) 1.1 0.001029 0.02153
GO:0010923 negative regulation of phosphatase activity 2.35% (2/85) 5.39 0.001049 0.021738
GO:0009900 dehiscence 4.71% (4/85) 3.17 0.001068 0.02189
GO:0009707 chloroplast outer membrane 3.53% (3/85) 3.89 0.001118 0.0227
GO:0018024 histone-lysine N-methyltransferase activity 3.53% (3/85) 3.83 0.001263 0.025128
GO:0009896 positive regulation of catabolic process 7.06% (6/85) 2.33 0.001256 0.025251
GO:0003968 RNA-directed 5'-3' RNA polymerase activity 2.35% (2/85) 5.2 0.001357 0.026747
GO:0043414 macromolecule methylation 5.88% (5/85) 2.62 0.001385 0.027036
GO:0005979 regulation of glycogen biosynthetic process 2.35% (2/85) 5.14 0.001468 0.028384
GO:0010492 maintenance of shoot apical meristem identity 3.53% (3/85) 3.72 0.001585 0.030362
GO:0009894 regulation of catabolic process 9.41% (8/85) 1.86 0.00167 0.031691
GO:1901381 positive regulation of potassium ion transmembrane transport 2.35% (2/85) 5.04 0.001703 0.031712
GO:0010604 positive regulation of macromolecule metabolic process 18.82% (16/85) 1.17 0.001693 0.03183
GO:0016278 lysine N-methyltransferase activity 3.53% (3/85) 3.66 0.001764 0.03198
GO:0016279 protein-lysine N-methyltransferase activity 3.53% (3/85) 3.66 0.001764 0.03198
GO:0050789 regulation of biological process 49.41% (42/85) 0.56 0.001789 0.03214
GO:0035308 negative regulation of protein dephosphorylation 2.35% (2/85) 4.99 0.001826 0.032238
GO:0035194 post-transcriptional gene silencing by RNA 3.53% (3/85) 3.65 0.001811 0.032249
GO:0031329 regulation of cellular catabolic process 8.24% (7/85) 2.02 0.001754 0.032374
GO:0071675 regulation of mononuclear cell migration 2.35% (2/85) 4.94 0.001954 0.033333
GO:0035305 negative regulation of dephosphorylation 2.35% (2/85) 4.94 0.001954 0.033333
GO:0003879 ATP phosphoribosyltransferase activity 1.18% (1/85) 8.85 0.002175 0.033698
GO:0050521 alpha-glucan, water dikinase activity 1.18% (1/85) 8.85 0.002175 0.033698
GO:0102216 maltodextrin water dikinase 1.18% (1/85) 8.85 0.002175 0.033698
GO:0102218 starch, H2O dikinase activity 1.18% (1/85) 8.85 0.002175 0.033698
GO:0010006 Toc complex 1.18% (1/85) 8.85 0.002175 0.033698
GO:0031897 Tic complex 1.18% (1/85) 8.85 0.002175 0.033698
GO:0051752 phosphoglucan, water dikinase activity 1.18% (1/85) 8.85 0.002175 0.033698
GO:0000166 nucleotide binding 21.18% (18/85) 1.06 0.001953 0.033889
GO:1901265 nucleoside phosphate binding 21.18% (18/85) 1.06 0.001953 0.033889
GO:0004930 G protein-coupled receptor activity 2.35% (2/85) 4.85 0.002222 0.034167
GO:0000792 heterochromatin 3.53% (3/85) 3.58 0.002056 0.03449
GO:0010158 abaxial cell fate specification 2.35% (2/85) 4.89 0.002086 0.034706
GO:0140110 transcription regulator activity 14.12% (12/85) 1.38 0.002052 0.034716
GO:0048609 multicellular organismal reproductive process 9.41% (8/85) 1.78 0.00229 0.034957
GO:1901360 organic cyclic compound metabolic process 29.41% (25/85) 0.83 0.002131 0.035176
GO:0042054 histone methyltransferase activity 3.53% (3/85) 3.56 0.002159 0.035348
GO:0036094 small molecule binding 22.35% (19/85) 1.0 0.002413 0.036281
GO:0022414 reproductive process 30.59% (26/85) 0.8 0.002398 0.036327
GO:0040029 epigenetic regulation of gene expression 4.71% (4/85) 2.81 0.002611 0.03897
GO:0009649 entrainment of circadian clock 2.35% (2/85) 4.72 0.002654 0.039324
GO:0005983 starch catabolic process 2.35% (2/85) 4.68 0.002806 0.040981
GO:0070873 regulation of glycogen metabolic process 2.35% (2/85) 4.68 0.002806 0.040981
GO:0006325 chromatin organization 5.88% (5/85) 2.37 0.002937 0.042585
GO:0043024 ribosomal small subunit binding 2.35% (2/85) 4.64 0.002962 0.042648
GO:0032991 protein-containing complex 23.53% (20/85) 0.93 0.003132 0.044463
GO:0060148 positive regulation of post-transcriptional gene silencing 2.35% (2/85) 4.6 0.003122 0.044637
GO:0061014 positive regulation of mRNA catabolic process 3.53% (3/85) 3.34 0.003304 0.045017
GO:0001708 cell fate specification 3.53% (3/85) 3.34 0.003304 0.045017
GO:0018205 peptidyl-lysine modification 5.88% (5/85) 2.34 0.003198 0.045084
GO:0003723 RNA binding 15.29% (13/85) 1.23 0.003252 0.045215
GO:0016441 post-transcriptional gene silencing 3.53% (3/85) 3.35 0.003236 0.045309
GO:0006144 purine nucleobase metabolic process 2.35% (2/85) 4.56 0.003287 0.045386
GO:0008276 protein methyltransferase activity 3.53% (3/85) 3.33 0.003373 0.045647
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 4.71% (4/85) 2.71 0.003397 0.045665
GO:0002685 regulation of leukocyte migration 2.35% (2/85) 4.52 0.003455 0.046138
GO:0010017 red or far-red light signaling pathway 3.53% (3/85) 3.3 0.003584 0.047557
GO:0071489 cellular response to red or far red light 3.53% (3/85) 3.29 0.003657 0.0482
GO:0030218 erythrocyte differentiation 2.35% (2/85) 4.35 0.004354 0.049655
GO:0003219 cardiac right ventricle formation 1.18% (1/85) 7.85 0.004344 0.049827
GO:0003939 L-iditol 2-dehydrogenase activity 1.18% (1/85) 7.85 0.004344 0.049827
GO:0006062 sorbitol catabolic process 1.18% (1/85) 7.85 0.004344 0.049827
GO:0009010 sorbitol-6-phosphate 2-dehydrogenase activity 1.18% (1/85) 7.85 0.004344 0.049827
GO:0019407 hexitol catabolic process 1.18% (1/85) 7.85 0.004344 0.049827
GO:0019519 pentitol metabolic process 1.18% (1/85) 7.85 0.004344 0.049827
GO:0019527 pentitol catabolic process 1.18% (1/85) 7.85 0.004344 0.049827
GO:0019697 L-xylitol catabolic process to xylulose 5-phosphate 1.18% (1/85) 7.85 0.004344 0.049827
GO:0046526 D-xylulose reductase activity 1.18% (1/85) 7.85 0.004344 0.049827
GO:0050255 ribitol 2-dehydrogenase activity 1.18% (1/85) 7.85 0.004344 0.049827
GO:0051160 L-xylitol catabolic process 1.18% (1/85) 7.85 0.004344 0.049827
GO:0051164 L-xylitol metabolic process 1.18% (1/85) 7.85 0.004344 0.049827
GO:0102198 L-idonate 5-dehydrogenase activity (NAD-dependent) 1.18% (1/85) 7.85 0.004344 0.049827
GO:0004455 ketol-acid reductoisomerase activity 1.18% (1/85) 7.85 0.004344 0.049827
GO:0061371 determination of heart left/right asymmetry 1.18% (1/85) 7.85 0.004344 0.049827
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_254 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_69 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_105 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_153 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_188 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_202 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_210 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_211 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (85) (download table)

InterPro Domains

GO Terms

Family Terms