SOLTUB.AGRIA.G00000011433

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0013635 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011433
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	505	538
IPR002885	Pentatricopeptide_repeat	259	293
IPR002885	Pentatricopeptide_repeat	329	363
IPR002885	Pentatricopeptide_repeat	365	397
IPR002885	Pentatricopeptide_repeat	574	607
IPR002885	Pentatricopeptide_repeat	470	503
IPR002885	Pentatricopeptide_repeat	294	327
IPR002885	Pentatricopeptide_repeat	221	270
IPR002885	Pentatricopeptide_repeat	470	515
IPR002885	Pentatricopeptide_repeat	291	340
IPR002885	Pentatricopeptide_repeat	361	408

External Links

No external refs found!