Description : Pentatricopeptide repeat-containing protein
Gene families : OG_02_0013635 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011433 | |
Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005737 | cytoplasm | IEA | AHRD |
BP | GO:0016070 | RNA metabolic process | IEA | AHRD |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEA | AHRD |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000373 | Group II intron splicing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000963 | mitochondrial RNA processing | IEP | Predict GO terms from Neighborhoods |
MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
CC | GO:0009536 | plastid | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010467 | gene expression | IEP | Predict GO terms from Neighborhoods |
BP | GO:0015979 | photosynthesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016071 | mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090615 | mitochondrial mRNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0140053 | mitochondrial gene expression | IEP | Predict GO terms from Neighborhoods |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 505 | 538 |
IPR002885 | Pentatricopeptide_repeat | 259 | 293 |
IPR002885 | Pentatricopeptide_repeat | 329 | 363 |
IPR002885 | Pentatricopeptide_repeat | 365 | 397 |
IPR002885 | Pentatricopeptide_repeat | 574 | 607 |
IPR002885 | Pentatricopeptide_repeat | 470 | 503 |
IPR002885 | Pentatricopeptide_repeat | 294 | 327 |
IPR002885 | Pentatricopeptide_repeat | 221 | 270 |
IPR002885 | Pentatricopeptide_repeat | 470 | 515 |
IPR002885 | Pentatricopeptide_repeat | 291 | 340 |
IPR002885 | Pentatricopeptide_repeat | 361 | 408 |
No external refs found! |