Coexpression cluster: Cluster_176 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 31.52% (29/92) 2.4 0.0 0.0
GO:0090304 nucleic acid metabolic process 35.87% (33/92) 2.12 0.0 0.0
GO:0140053 mitochondrial gene expression 13.04% (12/92) 4.5 0.0 0.0
GO:0006396 RNA processing 26.09% (24/92) 2.59 0.0 0.0
GO:0010467 gene expression 13.04% (12/92) 4.3 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 38.04% (35/92) 1.91 0.0 0.0
GO:0016071 mRNA metabolic process 19.57% (18/92) 2.97 0.0 0.0
GO:0046483 heterocycle metabolic process 40.22% (37/92) 1.61 0.0 0.0
GO:0000959 mitochondrial RNA metabolic process 13.04% (12/92) 3.67 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 40.22% (37/92) 1.56 0.0 0.0
GO:0090615 mitochondrial mRNA processing 7.61% (7/92) 5.43 0.0 0.0
GO:0006397 mRNA processing 14.13% (13/92) 3.38 0.0 0.0
GO:0003723 RNA binding 27.17% (25/92) 2.06 0.0 0.0
GO:0000963 mitochondrial RNA processing 9.78% (9/92) 4.21 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 40.22% (37/92) 1.28 0.0 6e-06
GO:0006725 cellular aromatic compound metabolic process 38.04% (35/92) 1.33 0.0 6e-06
GO:0043170 macromolecule metabolic process 44.57% (41/92) 0.99 2e-06 0.000175
GO:1903311 regulation of mRNA metabolic process 8.7% (8/92) 3.05 6e-06 0.00051
GO:0003676 nucleic acid binding 32.61% (30/92) 1.16 1e-05 0.000809
GO:0006807 nitrogen compound metabolic process 48.91% (45/92) 0.81 1.6e-05 0.001188
GO:0009451 RNA modification 9.78% (9/92) 2.63 1.5e-05 0.001217
GO:0009536 plastid 18.48% (17/92) 1.65 2.5e-05 0.001767
GO:0004386 helicase activity 6.52% (6/92) 3.16 6e-05 0.004137
GO:0043488 regulation of mRNA stability 5.43% (5/92) 3.38 0.000125 0.008273
GO:0140640 catalytic activity, acting on a nucleic acid 10.87% (10/92) 2.07 0.000139 0.008825
GO:1901363 heterocyclic compound binding 42.39% (39/92) 0.78 0.000154 0.009393
GO:1903313 positive regulation of mRNA metabolic process 5.43% (5/92) 3.3 0.00016 0.009394
GO:0016604 nuclear body 8.7% (8/92) 2.33 0.000204 0.010072
GO:0097159 organic cyclic compound binding 42.39% (39/92) 0.77 0.00018 0.010187
GO:0140657 ATP-dependent activity 9.78% (9/92) 2.16 0.000194 0.010241
GO:0043487 regulation of RNA stability 5.43% (5/92) 3.23 0.000202 0.010314
GO:0140513 nuclear protein-containing complex 13.04% (12/92) 1.78 0.000192 0.010474
GO:0061013 regulation of mRNA catabolic process 5.43% (5/92) 3.18 0.000237 0.011378
GO:0003724 RNA helicase activity 4.35% (4/92) 3.71 0.00026 0.012117
GO:0060149 negative regulation of post-transcriptional gene silencing 2.17% (2/92) 6.27 0.000297 0.013444
GO:0060147 regulation of post-transcriptional gene silencing 3.26% (3/92) 4.51 0.00032 0.014051
GO:0008186 ATP-dependent activity, acting on RNA 4.35% (4/92) 3.56 0.000384 0.016422
GO:0034458 3'-5' RNA helicase activity 2.17% (2/92) 5.92 0.00049 0.020394
GO:0016556 mRNA modification 5.43% (5/92) 2.93 0.00053 0.021503
GO:0003725 double-stranded RNA binding 3.26% (3/92) 4.15 0.000669 0.026478
GO:0043330 response to exogenous dsRNA 2.17% (2/92) 5.64 0.000728 0.028119
GO:0043331 response to dsRNA 2.17% (2/92) 5.56 0.000818 0.030833
GO:0044237 cellular metabolic process 50.0% (46/92) 0.56 0.001031 0.037086
GO:0044238 primary metabolic process 47.83% (44/92) 0.59 0.00101 0.037195
GO:0034472 snRNA 3'-end processing 2.17% (2/92) 5.34 0.001118 0.037644
GO:0004525 ribonuclease III activity 2.17% (2/92) 5.34 0.001118 0.037644
GO:0032296 double-stranded RNA-specific ribonuclease activity 2.17% (2/92) 5.34 0.001118 0.037644
GO:0035196 miRNA processing 3.26% (3/92) 3.87 0.001159 0.038229
GO:0022618 ribonucleoprotein complex assembly 5.43% (5/92) 2.66 0.0012 0.038773
GO:0140098 catalytic activity, acting on RNA 7.61% (7/92) 2.09 0.001349 0.042697
GO:0044806 G-quadruplex DNA unwinding 2.17% (2/92) 5.15 0.001462 0.045386
GO:0080156 mitochondrial mRNA modification 4.35% (4/92) 3.03 0.00151 0.045969
GO:0071826 ribonucleoprotein complex subunit organization 5.43% (5/92) 2.58 0.001549 0.046256
GO:0008494 translation activator activity 2.17% (2/92) 5.09 0.001587 0.046521
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_261 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_62 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_69 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_74 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_118 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (92) (download table)

InterPro Domains

GO Terms

Family Terms