SOLTUB.AGRIA.G00000011728

Description : Pectate lyase

Gene families : OG_02_0001537 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011728
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_71

Extended	Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	IEA	AHRD
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	None	Extended
CC	GO:0031226	intrinsic component of plasma membrane	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IEA	AHRD
CC	GO:0046658	anchored component of plasma membrane	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098542	defense response to other organism	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000138	Golgi trans cisterna	IEP	Predict GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005768	endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005795	Golgi stack	IEP	Predict GO terms from Neighborhoods
CC	GO:0005797	Golgi medial cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
BP	GO:0006073	cellular glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006080	substituted mannan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006949	syncytium formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008378	galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008810	cellulase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0009664	plant-type cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009739	response to gibberellin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009827	plant-type cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009828	plant-type cell wall loosening	IEP	Predict GO terms from Neighborhoods
BP	GO:0010114	response to red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0010191	mucilage metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010192	mucilage biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010311	lateral root formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010392	galactoglucomannan metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0017096	acetylserotonin O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019187	beta-1,4-mannosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030186	melatonin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030187	melatonin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030245	cellulose catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0030516	regulation of axon extension	IEP	Predict GO terms from Neighborhoods
MF	GO:0030744	luteolin O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030755	quercetin 3-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031901	early endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032400	melanosome localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032401	establishment of melanosome localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032402	melanosome transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0033799	myricetin 3'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034394	protein localization to cell surface	IEP	Predict GO terms from Neighborhoods
BP	GO:0035418	protein localization to synapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0035619	root hair tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045773	positive regulation of axon extension	IEP	Predict GO terms from Neighborhoods
MF	GO:0047259	glucomannan 4-beta-mannosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047763	caffeate O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048168	regulation of neuronal synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048169	regulation of long-term neuronal synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048219	inter-Golgi cisterna vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050772	positive regulation of axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051069	galactomannan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051070	galactomannan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051275	beta-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051552	flavone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051553	flavone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051554	flavonol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051555	flavonol biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051753	mannan synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051875	pigment granule localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051904	pigment granule transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051905	establishment of pigment granule localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0062150	amorpha-4,11-diene 12-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0062237	protein localization to postsynapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090378	seed trichome elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097120	receptor localization to synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0097502	mannosylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0098685	Schaffer collateral - CA1 synapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0098837	postsynaptic recycling endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0098845	postsynaptic endosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0098877	neurotransmitter receptor transport to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098887	neurotransmitter receptor transport, endosome to postsynaptic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098969	neurotransmitter receptor transport to postsynaptic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0099072	regulation of postsynaptic membrane neurotransmitter receptor levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0099637	neurotransmitter receptor transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099638	endosome to plasma membrane protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099639	neurotransmitter receptor transport, endosome to plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0102822	quercetin 3'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102934	costunolide synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140014	mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:1901428	regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901430	positive regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902414	protein localization to cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:1903078	positive regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903539	protein localization to postsynaptic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903540	establishment of protein localization to postsynaptic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1904377	positive regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1905477	positive regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1990059	fruit valve development	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	138	319
IPR011050	Pectin_lyase_fold/virulence	38	397

External Links

No external refs found!

SOLTUB.AGRIA.G00000011728

Expression Profile

Co-expression Networks

Functional Annotation