SOLTUB.AGRIA.G00000012226

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0013861 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012226
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_165

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010257	NADH dehydrogenase complex assembly	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEA	AHRD
BP	GO:0033108	mitochondrial respiratory chain complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990825	sequence-specific mRNA binding	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000464	endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000472	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000712	resolution of meiotic recombination intermediates	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000967	rRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0001674	female germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002128	tRNA nucleoside ribose methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003689	DNA clamp loader activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005663	DNA replication factor C complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006271	DNA strand elongation involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006272	leading strand elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006378	mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006379	mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0015030	Cajal body	IEP	Predict GO terms from Neighborhoods
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022616	DNA strand elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030619	U1 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030620	U2 snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031391	Elg1 RFC-like complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031935	obsolete regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Predict GO terms from Neighborhoods
BP	GO:0034463	90S preribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034471	ncRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0034511	U3 snoRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0034512	box C/D RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Predict GO terms from Neighborhoods
MF	GO:0042134	rRNA primary transcript binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0043631	RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0061860	DNA clamp unloader activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
MF	GO:0062105	RNA 2'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071025	RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071027	nuclear RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071028	nuclear mRNA surveillance	IEP	Predict GO terms from Neighborhoods
CC	GO:0071601	sphere organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090618	DNA clamp unloading	IEP	Predict GO terms from Neighborhoods
BP	GO:0097428	protein maturation by iron-sulfur cluster transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0098787	mRNA cleavage involved in mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0098789	pre-mRNA cleavage required for polyadenylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0106050	tRNA 2'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	595	644
IPR002885	Pentatricopeptide_repeat	525	574
IPR002885	Pentatricopeptide_repeat	245	294
IPR002885	Pentatricopeptide_repeat	455	503
IPR002885	Pentatricopeptide_repeat	350	399
IPR002885	Pentatricopeptide_repeat	319	347
IPR002885	Pentatricopeptide_repeat	718	746
IPR002885	Pentatricopeptide_repeat	173	201
IPR002885	Pentatricopeptide_repeat	423	453
IPR002885	Pentatricopeptide_repeat	563	597
IPR002885	Pentatricopeptide_repeat	530	562
IPR002885	Pentatricopeptide_repeat	249	277
IPR002885	Pentatricopeptide_repeat	718	750
IPR002885	Pentatricopeptide_repeat	284	316
IPR002885	Pentatricopeptide_repeat	388	422
IPR002885	Pentatricopeptide_repeat	424	457
IPR002885	Pentatricopeptide_repeat	598	632
IPR002885	Pentatricopeptide_repeat	319	352
IPR002885	Pentatricopeptide_repeat	493	525
IPR002885	Pentatricopeptide_repeat	459	492
IPR002885	Pentatricopeptide_repeat	633	666

External Links

No external refs found!

SOLTUB.AGRIA.G00000012226

Expression Profile

Co-expression Networks

Functional Annotation