Coexpression cluster: Cluster_165 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 61.33% (46/75) 2.89 0.0 0.0
GO:0016070 RNA metabolic process 53.33% (40/75) 3.16 0.0 0.0
GO:0034660 ncRNA metabolic process 40.0% (30/75) 3.88 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 61.33% (46/75) 2.6 0.0 0.0
GO:0006396 RNA processing 45.33% (34/75) 3.39 0.0 0.0
GO:0034470 ncRNA processing 36.0% (27/75) 4.0 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 64.0% (48/75) 2.23 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 34.67% (26/75) 3.74 0.0 0.0
GO:0046483 heterocycle metabolic process 61.33% (46/75) 2.22 0.0 0.0
GO:0016072 rRNA metabolic process 26.67% (20/75) 4.51 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 61.33% (46/75) 2.02 0.0 0.0
GO:0006364 rRNA processing 24.0% (18/75) 4.5 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 28.0% (21/75) 3.97 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 61.33% (46/75) 1.89 0.0 0.0
GO:0043170 macromolecule metabolic process 69.33% (52/75) 1.63 0.0 0.0
GO:0032991 protein-containing complex 50.67% (38/75) 2.04 0.0 0.0
GO:0006807 nitrogen compound metabolic process 69.33% (52/75) 1.31 0.0 0.0
GO:0043228 non-membrane-bounded organelle 40.0% (30/75) 2.18 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 40.0% (30/75) 2.18 0.0 0.0
GO:0005730 nucleolus 26.67% (20/75) 2.94 0.0 0.0
GO:0003723 RNA binding 33.33% (25/75) 2.36 0.0 0.0
GO:0044238 primary metabolic process 69.33% (52/75) 1.12 0.0 0.0
GO:1990904 ribonucleoprotein complex 22.67% (17/75) 2.99 0.0 0.0
GO:1902494 catalytic complex 28.0% (21/75) 2.53 0.0 0.0
GO:0005654 nucleoplasm 26.67% (20/75) 2.55 0.0 0.0
GO:0006399 tRNA metabolic process 14.67% (11/75) 3.85 0.0 0.0
GO:0044237 cellular metabolic process 69.33% (52/75) 1.03 0.0 0.0
GO:0110165 cellular anatomical entity 92.0% (69/75) 0.61 0.0 0.0
GO:0005575 cellular_component 92.0% (69/75) 0.59 0.0 0.0
GO:0030687 preribosome, large subunit precursor 8.0% (6/75) 5.78 0.0 0.0
GO:0071704 organic substance metabolic process 70.67% (53/75) 0.93 0.0 0.0
GO:0008173 RNA methyltransferase activity 8.0% (6/75) 5.54 0.0 0.0
GO:0005488 binding 82.67% (62/75) 0.72 0.0 0.0
GO:0043229 intracellular organelle 73.33% (55/75) 0.88 0.0 0.0
GO:0043226 organelle 73.33% (55/75) 0.87 0.0 0.0
GO:0009987 cellular process 84.0% (63/75) 0.69 0.0 0.0
GO:0001510 RNA methylation 8.0% (6/75) 5.25 0.0 1e-06
GO:0008152 metabolic process 72.0% (54/75) 0.86 0.0 1e-06
GO:0003676 nucleic acid binding 41.33% (31/75) 1.51 0.0 1e-06
GO:0030684 preribosome 9.33% (7/75) 4.61 0.0 1e-06
GO:0140513 nuclear protein-containing complex 21.33% (16/75) 2.49 0.0 1e-06
GO:0009451 RNA modification 14.67% (11/75) 3.22 0.0 1e-06
GO:0008150 biological_process 89.33% (67/75) 0.54 0.0 3e-06
GO:0004386 helicase activity 10.67% (8/75) 3.87 0.0 3e-06
GO:0140657 ATP-dependent activity 16.0% (12/75) 2.87 0.0 3e-06
GO:1901363 heterocyclic compound binding 53.33% (40/75) 1.11 0.0 4e-06
GO:0008033 tRNA processing 10.67% (8/75) 3.81 0.0 4e-06
GO:0097159 organic cyclic compound binding 53.33% (40/75) 1.1 0.0 4e-06
GO:0003724 RNA helicase activity 8.0% (6/75) 4.59 0.0 7e-06
GO:0003674 molecular_function 86.67% (65/75) 0.54 0.0 1.1e-05
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 6.67% (5/75) 5.14 0.0 1.1e-05
GO:0030488 tRNA methylation 5.33% (4/75) 6.12 0.0 1.1e-05
GO:0090501 RNA phosphodiester bond hydrolysis 9.33% (7/75) 3.95 0.0 1.2e-05
GO:0008186 ATP-dependent activity, acting on RNA 8.0% (6/75) 4.44 0.0 1.2e-05
GO:0140535 intracellular protein-containing complex 16.0% (12/75) 2.62 1e-06 1.6e-05
GO:0097367 carbohydrate derivative binding 25.33% (19/75) 1.88 1e-06 1.6e-05
GO:0032774 RNA biosynthetic process 10.67% (8/75) 3.49 1e-06 1.7e-05
GO:0034062 5'-3' RNA polymerase activity 6.67% (5/75) 4.96 1e-06 1.8e-05
GO:0097747 RNA polymerase activity 6.67% (5/75) 4.9 1e-06 2.1e-05
GO:0044260 cellular macromolecule metabolic process 28.0% (21/75) 1.68 1e-06 3.3e-05
GO:0000428 DNA-directed RNA polymerase complex 6.67% (5/75) 4.76 1e-06 3.3e-05
GO:0035639 purine ribonucleoside triphosphate binding 22.67% (17/75) 1.95 1e-06 3.4e-05
GO:0062105 RNA 2'-O-methyltransferase activity 4.0% (3/75) 6.91 2e-06 5e-05
GO:0030880 RNA polymerase complex 6.67% (5/75) 4.63 2e-06 5e-05
GO:0006351 DNA-templated transcription 8.0% (6/75) 3.93 3e-06 7.3e-05
GO:0051246 regulation of protein metabolic process 21.33% (16/75) 1.94 3e-06 7.3e-05
GO:0097659 nucleic acid-templated transcription 8.0% (6/75) 3.9 3e-06 8.1e-05
GO:0006400 tRNA modification 8.0% (6/75) 3.9 3e-06 8.1e-05
GO:0016779 nucleotidyltransferase activity 8.0% (6/75) 3.88 4e-06 8.5e-05
GO:0032555 purine ribonucleotide binding 22.67% (17/75) 1.84 4e-06 8.6e-05
GO:0022618 ribonucleoprotein complex assembly 9.33% (7/75) 3.44 4e-06 9e-05
GO:0017076 purine nucleotide binding 22.67% (17/75) 1.83 4e-06 9e-05
GO:0003824 catalytic activity 58.67% (44/75) 0.83 4e-06 0.000101
GO:0005697 telomerase holoenzyme complex 4.0% (3/75) 6.52 5e-06 0.000102
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic 6.67% (5/75) 4.36 5e-06 0.000107
GO:0060255 regulation of macromolecule metabolic process 37.33% (28/75) 1.24 5e-06 0.000107
GO:0098781 ncRNA transcription 5.33% (4/75) 5.17 5e-06 0.000107
GO:0032553 ribonucleotide binding 22.67% (17/75) 1.8 5e-06 0.000108
GO:0090305 nucleic acid phosphodiester bond hydrolysis 9.33% (7/75) 3.38 5e-06 0.000108
GO:0005524 ATP binding 20.0% (15/75) 1.97 5e-06 0.000108
GO:0071826 ribonucleoprotein complex subunit organization 9.33% (7/75) 3.36 6e-06 0.000115
GO:0005736 RNA polymerase I complex 4.0% (3/75) 6.36 6e-06 0.000131
GO:0043933 protein-containing complex organization 17.33% (13/75) 2.12 8e-06 0.000159
GO:0043414 macromolecule methylation 9.33% (7/75) 3.28 8e-06 0.000161
GO:0000967 rRNA 5'-end processing 4.0% (3/75) 6.22 9e-06 0.000169
GO:0034471 ncRNA 5'-end processing 4.0% (3/75) 6.22 9e-06 0.000169
GO:0019222 regulation of metabolic process 41.33% (31/75) 1.1 9e-06 0.00017
GO:0010604 positive regulation of macromolecule metabolic process 25.33% (19/75) 1.6 1e-05 0.000181
GO:0000464 endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.67% (2/75) 8.44 1.1e-05 0.000201
GO:0080178 5-carbamoylmethyl uridine residue modification 2.67% (2/75) 8.44 1.1e-05 0.000201
GO:0005515 protein binding 62.67% (47/75) 0.73 1.2e-05 0.000209
GO:0032259 methylation 10.67% (8/75) 2.91 1.2e-05 0.000211
GO:0055029 nuclear DNA-directed RNA polymerase complex 5.33% (4/75) 4.86 1.2e-05 0.000213
GO:0032559 adenyl ribonucleotide binding 20.0% (15/75) 1.86 1.2e-05 0.00022
GO:0030554 adenyl nucleotide binding 20.0% (15/75) 1.85 1.3e-05 0.000231
GO:0005694 chromosome 10.67% (8/75) 2.88 1.4e-05 0.000236
GO:0016787 hydrolase activity 28.0% (21/75) 1.45 1.4e-05 0.000236
GO:0036094 small molecule binding 29.33% (22/75) 1.39 1.6e-05 0.000272
GO:0008175 tRNA methyltransferase activity 4.0% (3/75) 5.91 1.7e-05 0.000288
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5.33% (4/75) 4.69 1.9e-05 0.00031
GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation 2.67% (2/75) 8.03 2.2e-05 0.000355
GO:0031538 negative regulation of anthocyanin metabolic process 2.67% (2/75) 8.03 2.2e-05 0.000355
GO:0043167 ion binding 38.67% (29/75) 1.09 2.4e-05 0.000377
GO:0006360 transcription by RNA polymerase I 4.0% (3/75) 5.75 2.4e-05 0.000379
GO:0036260 RNA capping 4.0% (3/75) 5.75 2.4e-05 0.000379
GO:0000478 endonucleolytic cleavage involved in rRNA processing 5.33% (4/75) 4.6 2.4e-05 0.000381
GO:0006383 transcription by RNA polymerase III 4.0% (3/75) 5.57 3.6e-05 0.000553
GO:0000166 nucleotide binding 26.67% (20/75) 1.39 4.2e-05 0.00063
GO:1901265 nucleoside phosphate binding 26.67% (20/75) 1.39 4.2e-05 0.00063
GO:0000785 chromatin 9.33% (7/75) 2.91 4.2e-05 0.000632
GO:0008168 methyltransferase activity 9.33% (7/75) 2.91 4.3e-05 0.000635
GO:1990234 transferase complex 13.33% (10/75) 2.27 4.1e-05 0.00064
GO:2000278 regulation of DNA biosynthetic process 5.33% (4/75) 4.37 4.4e-05 0.000654
GO:0000469 cleavage involved in rRNA processing 5.33% (4/75) 4.31 5.2e-05 0.000754
GO:0016741 transferase activity, transferring one-carbon groups 9.33% (7/75) 2.85 5.4e-05 0.000777
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase activity 2.67% (2/75) 7.44 5.4e-05 0.000779
GO:0065003 protein-containing complex assembly 14.67% (11/75) 2.07 5.6e-05 0.000792
GO:0010628 positive regulation of gene expression 12.0% (9/75) 2.35 6.7e-05 0.000934
GO:0016887 ATP hydrolysis activity 5.33% (4/75) 4.22 6.6e-05 0.000937
GO:0009893 positive regulation of metabolic process 25.33% (19/75) 1.39 6.8e-05 0.00094
GO:0010587 miRNA catabolic process 2.67% (2/75) 7.22 7.6e-05 0.001044
GO:0032210 regulation of telomere maintenance via telomerase 4.0% (3/75) 5.12 9.1e-05 0.001241
GO:0010638 positive regulation of organelle organization 8.0% (6/75) 3.04 9.3e-05 0.001258
GO:0002199 zona pellucida receptor complex 2.67% (2/75) 7.03 0.000101 0.001314
GO:0033588 elongator holoenzyme complex 2.67% (2/75) 7.03 0.000101 0.001314
GO:1905323 telomerase holoenzyme complex assembly 2.67% (2/75) 7.03 0.000101 0.001314
GO:0016435 rRNA (guanine) methyltransferase activity 2.67% (2/75) 7.03 0.000101 0.001314
GO:0016436 rRNA (uridine) methyltransferase activity 2.67% (2/75) 7.03 0.000101 0.001314
GO:0000154 rRNA modification 4.0% (3/75) 5.03 0.00011 0.001424
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.0% (6/75) 2.98 0.000116 0.00149
GO:0005819 spindle 6.67% (5/75) 3.36 0.000133 0.001675
GO:0030515 snoRNA binding 4.0% (3/75) 4.94 0.000132 0.001682
GO:0043168 anion binding 22.67% (17/75) 1.42 0.000141 0.001772
GO:0034654 nucleobase-containing compound biosynthetic process 10.67% (8/75) 2.38 0.00015 0.001863
GO:0140101 catalytic activity, acting on a tRNA 6.67% (5/75) 3.28 0.000173 0.002138
GO:0008171 O-methyltransferase activity 5.33% (4/75) 3.84 0.000185 0.002247
GO:0006366 transcription by RNA polymerase II 4.0% (3/75) 4.78 0.000184 0.002257
GO:0010608 post-transcriptional regulation of gene expression 10.67% (8/75) 2.33 0.000188 0.002266
GO:1904356 regulation of telomere maintenance via telomere lengthening 4.0% (3/75) 4.75 0.000194 0.002326
GO:0032549 ribonucleoside binding 2.67% (2/75) 6.57 0.000198 0.002334
GO:0005832 chaperonin-containing T-complex 2.67% (2/75) 6.57 0.000198 0.002334
GO:0006417 regulation of translation 9.33% (7/75) 2.54 0.000204 0.002396
GO:0000966 RNA 5'-end processing 4.0% (3/75) 4.7 0.000215 0.0025
GO:0000956 nuclear-transcribed mRNA catabolic process 5.33% (4/75) 3.77 0.000221 0.002557
GO:1904851 positive regulation of establishment of protein localization to telomere 2.67% (2/75) 6.44 0.000237 0.002684
GO:0016423 tRNA (guanine) methyltransferase activity 2.67% (2/75) 6.44 0.000237 0.002684
GO:0006259 DNA metabolic process 12.0% (9/75) 2.1 0.00024 0.0027
GO:0006353 DNA-templated transcription termination 4.0% (3/75) 4.66 0.000237 0.002718
GO:0006281 DNA repair 9.33% (7/75) 2.48 0.000269 0.003003
GO:0005815 microtubule organizing center 8.0% (6/75) 2.75 0.000273 0.003034
GO:0000055 ribosomal large subunit export from nucleus 2.67% (2/75) 6.33 0.000279 0.003043
GO:0070034 telomerase RNA binding 2.67% (2/75) 6.33 0.000279 0.003043
GO:0080090 regulation of primary metabolic process 32.0% (24/75) 1.04 0.000282 0.003055
GO:0017069 snRNA binding 4.0% (3/75) 4.57 0.000285 0.003059
GO:0061695 transferase complex, transferring phosphorus-containing groups 6.67% (5/75) 3.12 0.000287 0.003061
GO:0033044 regulation of chromosome organization 6.67% (5/75) 3.13 0.000278 0.003066
GO:0034248 regulation of cellular amide metabolic process 9.33% (7/75) 2.44 0.000305 0.003237
GO:0050789 regulation of biological process 53.33% (40/75) 0.67 0.000326 0.003275
GO:0070202 regulation of establishment of protein localization to chromosome 2.67% (2/75) 6.22 0.000326 0.003288
GO:0070203 regulation of establishment of protein localization to telomere 2.67% (2/75) 6.22 0.000326 0.003288
GO:1904816 positive regulation of protein localization to chromosome, telomeric region 2.67% (2/75) 6.22 0.000326 0.003288
GO:0000176 nuclear exosome (RNase complex) 2.67% (2/75) 6.22 0.000326 0.003288
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.67% (2/75) 6.22 0.000326 0.003288
GO:0031974 membrane-enclosed lumen 10.67% (8/75) 2.22 0.000322 0.003348
GO:0043233 organelle lumen 10.67% (8/75) 2.22 0.000322 0.003348
GO:0070013 intracellular organelle lumen 10.67% (8/75) 2.22 0.000322 0.003348
GO:2000573 positive regulation of DNA biosynthetic process 4.0% (3/75) 4.46 0.000353 0.003522
GO:0001882 nucleoside binding 2.67% (2/75) 6.12 0.000375 0.0037
GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.67% (2/75) 6.12 0.000375 0.0037
GO:0000049 tRNA binding 4.0% (3/75) 4.4 0.000399 0.003908
GO:1904814 regulation of protein localization to chromosome, telomeric region 2.67% (2/75) 6.03 0.000428 0.004102
GO:0002098 tRNA wobble uridine modification 2.67% (2/75) 6.03 0.000428 0.004102
GO:0048530 fruit morphogenesis 2.67% (2/75) 6.03 0.000428 0.004102
GO:0016462 pyrophosphatase activity 8.0% (6/75) 2.63 0.000424 0.004126
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.0% (6/75) 2.61 0.000455 0.004336
GO:0010586 miRNA metabolic process 2.67% (2/75) 5.94 0.000485 0.004564
GO:0006402 mRNA catabolic process 5.33% (4/75) 3.47 0.000483 0.004568
GO:0051130 positive regulation of cellular component organization 9.33% (7/75) 2.31 0.000534 0.004999
GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex 2.67% (2/75) 5.86 0.000545 0.005043
GO:0001056 RNA polymerase III activity 2.67% (2/75) 5.86 0.000545 0.005043
GO:0016817 hydrolase activity, acting on acid anhydrides 8.0% (6/75) 2.56 0.000552 0.005077
GO:0048518 positive regulation of biological process 33.33% (25/75) 0.95 0.000557 0.005097
GO:0051173 positive regulation of nitrogen compound metabolic process 20.0% (15/75) 1.36 0.000582 0.0053
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.67% (2/75) 5.78 0.000608 0.005507
GO:0140097 catalytic activity, acting on DNA 6.67% (5/75) 2.86 0.00064 0.005762
GO:0042797 tRNA transcription by RNA polymerase III 2.67% (2/75) 5.7 0.000675 0.006045
GO:0009059 macromolecule biosynthetic process 13.33% (10/75) 1.76 0.000685 0.006103
GO:0002097 tRNA wobble base modification 2.67% (2/75) 5.63 0.000745 0.006567
GO:0009304 tRNA transcription 2.67% (2/75) 5.63 0.000745 0.006567
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 6.67% (5/75) 2.81 0.00076 0.00663
GO:0051171 regulation of nitrogen compound metabolic process 29.33% (22/75) 1.01 0.000759 0.006654
GO:0009303 rRNA transcription 2.67% (2/75) 5.57 0.000819 0.006993
GO:0007339 binding of sperm to zona pellucida 2.67% (2/75) 5.57 0.000819 0.006993
GO:0035036 sperm-egg recognition 2.67% (2/75) 5.57 0.000819 0.006993
GO:0022607 cellular component assembly 17.33% (13/75) 1.45 0.000811 0.007034
GO:0009892 negative regulation of metabolic process 20.0% (15/75) 1.31 0.000838 0.007123
GO:0032204 regulation of telomere maintenance 4.0% (3/75) 4.03 0.000853 0.007212
GO:0031647 regulation of protein stability 6.67% (5/75) 2.76 0.000896 0.007393
GO:0032212 positive regulation of telomere maintenance via telomerase 2.67% (2/75) 5.5 0.000895 0.007421
GO:0035265 organ growth 2.67% (2/75) 5.5 0.000895 0.007421
GO:0032728 positive regulation of interferon-beta production 2.67% (2/75) 5.5 0.000895 0.007421
GO:0000460 maturation of 5.8S rRNA 2.67% (2/75) 5.5 0.000895 0.007421
GO:0008094 ATP-dependent activity, acting on DNA 5.33% (4/75) 3.22 0.000913 0.007492
GO:0000178 exosome (RNase complex) 2.67% (2/75) 5.44 0.000976 0.007851
GO:1905354 exoribonuclease complex 2.67% (2/75) 5.44 0.000976 0.007851
GO:0005666 RNA polymerase III complex 2.67% (2/75) 5.44 0.000976 0.007851
GO:0008266 poly(U) RNA binding 4.0% (3/75) 3.95 0.000988 0.007874
GO:0051247 positive regulation of protein metabolic process 10.67% (8/75) 1.98 0.000965 0.007884
GO:0048522 positive regulation of cellular process 28.0% (21/75) 1.02 0.000987 0.007908
GO:0051656 establishment of organelle localization 6.67% (5/75) 2.71 0.001016 0.008058
GO:0001522 pseudouridine synthesis 2.67% (2/75) 5.38 0.001059 0.008362
GO:0008187 poly-pyrimidine tract binding 4.0% (3/75) 3.9 0.001105 0.008685
GO:0006401 RNA catabolic process 5.33% (4/75) 3.14 0.001126 0.008803
GO:0065007 biological regulation 54.67% (41/75) 0.58 0.001133 0.008822
GO:2000112 regulation of cellular macromolecule biosynthetic process 9.33% (7/75) 2.12 0.001139 0.008825
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 2.67% (2/75) 5.33 0.001146 0.008838
GO:0034655 nucleobase-containing compound catabolic process 6.67% (5/75) 2.66 0.00121 0.009288
GO:0009988 cell-cell recognition 2.67% (2/75) 5.27 0.001236 0.00936
GO:1904358 positive regulation of telomere maintenance via telomere lengthening 2.67% (2/75) 5.27 0.001236 0.00936
GO:0032648 regulation of interferon-beta production 2.67% (2/75) 5.27 0.001236 0.00936
GO:2001252 positive regulation of chromosome organization 4.0% (3/75) 3.82 0.001297 0.009777
GO:0071339 MLL1 complex 2.67% (2/75) 5.22 0.001329 0.009844
GO:0016075 rRNA catabolic process 2.67% (2/75) 5.22 0.001329 0.009844
GO:0071027 nuclear RNA surveillance 2.67% (2/75) 5.22 0.001329 0.009844
GO:0031399 regulation of protein modification process 10.67% (8/75) 1.91 0.001317 0.009884
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.67% (2/75) 5.17 0.001426 0.010513
GO:0005829 cytosol 28.0% (21/75) 0.97 0.001455 0.01068
GO:0001819 positive regulation of cytokine production 4.0% (3/75) 3.73 0.001546 0.011295
GO:0008649 rRNA methyltransferase activity 2.67% (2/75) 5.07 0.001629 0.011751
GO:0140102 catalytic activity, acting on a rRNA 2.67% (2/75) 5.07 0.001629 0.011751
GO:0071025 RNA surveillance 2.67% (2/75) 5.07 0.001629 0.011751
GO:0003682 chromatin binding 8.0% (6/75) 2.26 0.001637 0.011758
GO:0005665 RNA polymerase II, core complex 2.67% (2/75) 5.03 0.001736 0.012411
GO:0061715 obsolete miRNA 2'-O-methylation 1.33% (1/75) 9.03 0.001919 0.012585
GO:0035072 ecdysone-mediated induction of salivary gland cell autophagic cell death 1.33% (1/75) 9.03 0.001919 0.012585
GO:0035078 induction of programmed cell death by ecdysone 1.33% (1/75) 9.03 0.001919 0.012585
GO:0035081 induction of programmed cell death by hormones 1.33% (1/75) 9.03 0.001919 0.012585
GO:0072684 mitochondrial tRNA 3'-trailer cleavage, endonucleolytic 1.33% (1/75) 9.03 0.001919 0.012585
GO:0106162 mRNA N-acetyltransferase activity 1.33% (1/75) 9.03 0.001919 0.012585
GO:1904812 rRNA acetylation involved in maturation of SSU-rRNA 1.33% (1/75) 9.03 0.001919 0.012585
GO:1990882 rRNA acetylation 1.33% (1/75) 9.03 0.001919 0.012585
GO:1990883 rRNA cytidine N-acetyltransferase activity 1.33% (1/75) 9.03 0.001919 0.012585
GO:0001018 mitochondrial promoter sequence-specific DNA binding 1.33% (1/75) 9.03 0.001919 0.012585
GO:0071601 sphere organelle 1.33% (1/75) 9.03 0.001919 0.012585
GO:0031039 macronucleus 1.33% (1/75) 9.03 0.001919 0.012585
GO:1904868 telomerase catalytic core complex assembly 1.33% (1/75) 9.03 0.001919 0.012585
GO:0043045 DNA methylation involved in embryo development 1.33% (1/75) 9.03 0.001919 0.012585
GO:1900240 negative regulation of phenotypic switching 1.33% (1/75) 9.03 0.001919 0.012585
GO:1901538 changes to DNA methylation involved in embryo development 1.33% (1/75) 9.03 0.001919 0.012585
GO:1905064 negative regulation of vascular associated smooth muscle cell differentiation 1.33% (1/75) 9.03 0.001919 0.012585
GO:1905916 negative regulation of cell differentiation involved in phenotypic switching 1.33% (1/75) 9.03 0.001919 0.012585
GO:1905931 negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching 1.33% (1/75) 9.03 0.001919 0.012585
GO:0000054 ribosomal subunit export from nucleus 2.67% (2/75) 4.94 0.001958 0.012646
GO:0033750 ribosome localization 2.67% (2/75) 4.94 0.001958 0.012646
GO:0031167 rRNA methylation 2.67% (2/75) 4.94 0.001958 0.012646
GO:0031123 RNA 3'-end processing 4.0% (3/75) 3.61 0.00195 0.01274
GO:0006974 cellular response to DNA damage stimulus 9.33% (7/75) 1.98 0.002022 0.013006
GO:0033043 regulation of organelle organization 9.33% (7/75) 1.97 0.002047 0.013114
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic 2.67% (2/75) 4.98 0.001845 0.013139
GO:0051301 cell division 8.0% (6/75) 2.21 0.001904 0.013501
GO:0000175 3'-5'-exoribonuclease activity 2.67% (2/75) 4.86 0.002194 0.014004
GO:0010629 negative regulation of gene expression 9.33% (7/75) 1.95 0.002212 0.014068
GO:0044665 MLL1/2 complex 2.67% (2/75) 4.82 0.002316 0.014673
GO:0010468 regulation of gene expression 25.33% (19/75) 0.98 0.002402 0.015157
GO:1905634 regulation of protein localization to chromatin 2.67% (2/75) 4.78 0.002442 0.015352
GO:0042273 ribosomal large subunit biogenesis 2.67% (2/75) 4.74 0.002571 0.016101
GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters 2.67% (2/75) 4.7 0.002703 0.016864
GO:0016071 mRNA metabolic process 9.33% (7/75) 1.9 0.002742 0.017043
GO:0010605 negative regulation of macromolecule metabolic process 17.33% (13/75) 1.25 0.002789 0.017272
GO:0034661 ncRNA catabolic process 2.67% (2/75) 4.67 0.002838 0.017446
GO:0032481 positive regulation of type I interferon production 2.67% (2/75) 4.67 0.002838 0.017446
GO:0051168 nuclear export 4.0% (3/75) 3.39 0.002999 0.0183
GO:0005813 centrosome 5.33% (4/75) 2.75 0.002996 0.018352
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.67% (2/75) 4.6 0.003117 0.018954
GO:0031325 positive regulation of cellular metabolic process 18.67% (14/75) 1.17 0.003141 0.019026
GO:0071840 cellular component organization or biogenesis 30.67% (23/75) 0.82 0.003419 0.020636
GO:0016043 cellular component organization 29.33% (22/75) 0.84 0.003444 0.020714
GO:0099080 supramolecular complex 9.33% (7/75) 1.83 0.003568 0.021304
GO:0000373 Group II intron splicing 2.67% (2/75) 4.5 0.00356 0.021333
GO:0006397 mRNA processing 6.67% (5/75) 2.29 0.003619 0.021532
GO:0004532 exoribonuclease activity 2.67% (2/75) 4.47 0.003713 0.022016
GO:0071169 establishment of protein localization to chromatin 1.33% (1/75) 8.03 0.003834 0.022025
GO:0110136 protein-RNA complex remodeling 1.33% (1/75) 8.03 0.003834 0.022025
GO:0031590 wybutosine metabolic process 1.33% (1/75) 8.03 0.003834 0.022025
GO:0031591 wybutosine biosynthetic process 1.33% (1/75) 8.03 0.003834 0.022025
GO:1990275 preribosome binding 1.33% (1/75) 8.03 0.003834 0.022025
GO:1905063 regulation of vascular associated smooth muscle cell differentiation 1.33% (1/75) 8.03 0.003834 0.022025
GO:1905915 regulation of cell differentiation involved in phenotypic switching 1.33% (1/75) 8.03 0.003834 0.022025
GO:1905930 regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching 1.33% (1/75) 8.03 0.003834 0.022025
GO:1901998 toxin transport 2.67% (2/75) 4.44 0.00387 0.02208
GO:0000932 P-body 4.0% (3/75) 3.26 0.003858 0.022089
GO:0044270 cellular nitrogen compound catabolic process 6.67% (5/75) 2.27 0.003885 0.02209
GO:0044271 cellular nitrogen compound biosynthetic process 13.33% (10/75) 1.42 0.003901 0.022103
GO:0051640 organelle localization 6.67% (5/75) 2.27 0.003915 0.022112
GO:0046700 heterocycle catabolic process 6.67% (5/75) 2.26 0.003946 0.022209
GO:0004540 ribonuclease activity 4.0% (3/75) 3.24 0.003992 0.022393
GO:0022613 ribonucleoprotein complex biogenesis 4.0% (3/75) 3.27 0.003792 0.022405
GO:0008013 beta-catenin binding 2.67% (2/75) 4.41 0.00403 0.022453
GO:0015030 Cajal body 2.67% (2/75) 4.41 0.00403 0.022453
GO:0051052 regulation of DNA metabolic process 6.67% (5/75) 2.25 0.004101 0.022776
GO:0006457 protein folding 5.33% (4/75) 2.62 0.004165 0.023053
GO:0000027 ribosomal large subunit assembly 2.67% (2/75) 4.33 0.004527 0.024973
GO:0006378 mRNA polyadenylation 2.67% (2/75) 4.3 0.004699 0.025834
GO:0031981 nuclear lumen 4.0% (3/75) 3.15 0.004778 0.026185
GO:0032479 regulation of type I interferon production 2.67% (2/75) 4.27 0.004873 0.026619
GO:0005739 mitochondrion 13.33% (10/75) 1.38 0.004894 0.026645
GO:0032206 positive regulation of telomere maintenance 2.67% (2/75) 4.24 0.005051 0.02741
GO:0071987 WD40-repeat domain binding 2.67% (2/75) 4.22 0.005231 0.028298
GO:0009553 embryo sac development 4.0% (3/75) 3.09 0.005404 0.029139
GO:0008380 RNA splicing 5.33% (4/75) 2.51 0.005504 0.029483
GO:0001817 regulation of cytokine production 4.0% (3/75) 3.08 0.005486 0.029483
GO:0051306 mitotic sister chromatid separation 1.33% (1/75) 7.44 0.005745 0.029634
GO:0012502 induction of programmed cell death 1.33% (1/75) 7.44 0.005745 0.029634
GO:0051391 tRNA acetylation 1.33% (1/75) 7.44 0.005745 0.029634
GO:1990884 RNA acetylation 1.33% (1/75) 7.44 0.005745 0.029634
GO:2000200 regulation of ribosomal subunit export from nucleus 1.33% (1/75) 7.44 0.005745 0.029634
GO:0006390 mitochondrial transcription 1.33% (1/75) 7.44 0.005745 0.029634
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 1.33% (1/75) 7.44 0.005745 0.029634
GO:0001826 inner cell mass cell differentiation 1.33% (1/75) 7.44 0.005745 0.029634
GO:0006386 termination of RNA polymerase III transcription 1.33% (1/75) 7.44 0.005745 0.029634
GO:2000210 positive regulation of anoikis 1.33% (1/75) 7.44 0.005745 0.029634
GO:0060965 negative regulation of miRNA-mediated gene silencing 1.33% (1/75) 7.44 0.005745 0.029634
GO:0101031 chaperone complex 2.67% (2/75) 4.14 0.005791 0.029777
GO:0009561 megagametogenesis 2.67% (2/75) 4.17 0.005601 0.029911
GO:0051082 unfolded protein binding 4.0% (3/75) 2.97 0.006707 0.03438
GO:0043631 RNA polyadenylation 2.67% (2/75) 4.03 0.006781 0.034548
GO:0000470 maturation of LSU-rRNA 2.67% (2/75) 4.03 0.006781 0.034548
GO:0009057 macromolecule catabolic process 10.67% (8/75) 1.51 0.007011 0.035611
GO:0004518 nuclease activity 5.33% (4/75) 2.4 0.007166 0.036288
GO:0001755 neural crest cell migration 1.33% (1/75) 7.03 0.007653 0.036534
GO:0090497 mesenchymal cell migration 1.33% (1/75) 7.03 0.007653 0.036534
GO:0010589 leaf proximal/distal pattern formation 1.33% (1/75) 7.03 0.007653 0.036534
GO:0030847 termination of RNA polymerase II transcription, exosome-dependent 1.33% (1/75) 7.03 0.007653 0.036534
GO:0071034 CUT catabolic process 1.33% (1/75) 7.03 0.007653 0.036534
GO:0071043 CUT metabolic process 1.33% (1/75) 7.03 0.007653 0.036534
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 1.33% (1/75) 7.03 0.007653 0.036534
GO:0006529 asparagine biosynthetic process 1.33% (1/75) 7.03 0.007653 0.036534
GO:0070981 L-asparagine biosynthetic process 1.33% (1/75) 7.03 0.007653 0.036534
GO:0070982 L-asparagine metabolic process 1.33% (1/75) 7.03 0.007653 0.036534
GO:2001267 regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway 1.33% (1/75) 7.03 0.007653 0.036534
GO:2001268 negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway 1.33% (1/75) 7.03 0.007653 0.036534
GO:0090618 DNA clamp unloading 1.33% (1/75) 7.03 0.007653 0.036534
GO:0014009 glial cell proliferation 1.33% (1/75) 7.03 0.007653 0.036534
GO:0030623 U5 snRNA binding 1.33% (1/75) 7.03 0.007653 0.036534
GO:0045694 regulation of embryo sac egg cell differentiation 1.33% (1/75) 7.03 0.007653 0.036534
GO:2000767 positive regulation of cytoplasmic translation 1.33% (1/75) 7.03 0.007653 0.036534
GO:1900239 regulation of phenotypic switching 1.33% (1/75) 7.03 0.007653 0.036534
GO:0035770 ribonucleoprotein granule 5.33% (4/75) 2.36 0.007743 0.036855
GO:0036464 cytoplasmic ribonucleoprotein granule 5.33% (4/75) 2.39 0.007355 0.037132
GO:0031124 mRNA 3'-end processing 2.67% (2/75) 3.92 0.007843 0.037224
GO:0000959 mitochondrial RNA metabolic process 5.33% (4/75) 2.38 0.007419 0.03734
GO:0044183 protein folding chaperone 2.67% (2/75) 3.9 0.008063 0.038163
GO:0008408 3'-5' exonuclease activity 2.67% (2/75) 3.82 0.008974 0.042352
GO:0051054 positive regulation of DNA metabolic process 4.0% (3/75) 2.81 0.00915 0.04306
GO:0070199 establishment of protein localization to chromosome 1.33% (1/75) 6.7 0.009557 0.044353
GO:0070209 ASTRA complex 1.33% (1/75) 6.7 0.009557 0.044353
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 1.33% (1/75) 6.7 0.009557 0.044353
GO:0051151 negative regulation of smooth muscle cell differentiation 1.33% (1/75) 6.7 0.009557 0.044353
GO:0001147 transcription termination site sequence-specific DNA binding 1.33% (1/75) 6.7 0.009557 0.044353
GO:0045727 positive regulation of translation 4.0% (3/75) 2.78 0.009601 0.04443
GO:0043021 ribonucleoprotein complex binding 4.0% (3/75) 2.76 0.010065 0.046448
GO:0031648 protein destabilization 2.67% (2/75) 3.72 0.010173 0.04682
GO:0031331 positive regulation of cellular catabolic process 5.33% (4/75) 2.23 0.010592 0.048614
GO:0060341 regulation of cellular localization 6.67% (5/75) 1.92 0.010636 0.048682
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.67% (2/75) 3.69 0.010672 0.048711
GO:0014029 neural crest formation 1.33% (1/75) 6.44 0.011458 0.049582
GO:0042781 3'-tRNA processing endoribonuclease activity 1.33% (1/75) 6.44 0.011458 0.049582
GO:0061860 DNA clamp unloader activity 1.33% (1/75) 6.44 0.011458 0.049582
GO:0002128 tRNA nucleoside ribose methylation 1.33% (1/75) 6.44 0.011458 0.049582
GO:0106050 tRNA 2'-O-methyltransferase activity 1.33% (1/75) 6.44 0.011458 0.049582
GO:0048254 snoRNA localization 1.33% (1/75) 6.44 0.011458 0.049582
GO:0010424 DNA methylation on cytosine within a CG sequence 1.33% (1/75) 6.44 0.011458 0.049582
GO:0051150 regulation of smooth muscle cell differentiation 1.33% (1/75) 6.44 0.011458 0.049582
GO:1904707 positive regulation of vascular associated smooth muscle cell proliferation 1.33% (1/75) 6.44 0.011458 0.049582
GO:2000811 negative regulation of anoikis 1.33% (1/75) 6.44 0.011458 0.049582
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.33% (1/75) 6.44 0.011458 0.049582
GO:0004534 5'-3' exoribonuclease activity 1.33% (1/75) 6.44 0.011458 0.049582
GO:1900369 negative regulation of post-transcriptional gene silencing by RNA 1.33% (1/75) 6.44 0.011458 0.049582
GO:0007018 microtubule-based movement 4.0% (3/75) 2.69 0.011534 0.049654
GO:0051169 nuclear transport 4.0% (3/75) 2.69 0.011534 0.049654
GO:0032355 response to estradiol 2.67% (2/75) 3.67 0.010925 0.049731
GO:0019843 rRNA binding 4.0% (3/75) 2.68 0.011662 0.049946
GO:0007275 multicellular organism development 14.67% (11/75) 1.12 0.011636 0.049964
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_221 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_154 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (75) (download table)

InterPro Domains

GO Terms

Family Terms