SOLTUB.AGRIA.G00000012294

Description : F-box/LRR-repeat protein, putative

Gene families : OG_02_0005788 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012294
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_523

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005856	cytoskeleton	IEA	AHRD
BP	GO:0006508	proteolysis	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007049	cell cycle	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010646	regulation of cell communication	IEA	AHRD
BP	GO:0016567	protein ubiquitination	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0023051	regulation of signaling	IEA	AHRD
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032870	cellular response to hormone stimulus	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	IEA	AHRD
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0045202	synapse	IEA	AHRD
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	IEA	AHRD
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000775	chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000779	condensed chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:0002119	nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002164	larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002683	negative regulation of immune system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005777	peroxisome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005813	centrosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005815	microtubule organizing center	IEP	Predict GO terms from Neighborhoods
BP	GO:0006555	methionine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006977	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	IEP	Predict GO terms from Neighborhoods
BP	GO:0007062	sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007399	nervous system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0008340	determination of adult lifespan	IEP	Predict GO terms from Neighborhoods
BP	GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009554	megasporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009556	microsporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009759	indole glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009896	positive regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009908	flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010090	trichome morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010562	positive regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010883	regulation of lipid storage	IEP	Predict GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016143	S-glycoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019211	phosphatase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019757	glycosinolate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019760	glucosinolate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030018	Z disc	IEP	Predict GO terms from Neighborhoods
BP	GO:0030330	DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0030719	P granule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031430	M band	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031571	mitotic G1 DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031998	regulation of fatty acid beta-oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032000	positive regulation of fatty acid beta-oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0033353	S-adenosylmethionine cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0033673	negative regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034293	sexual sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035306	positive regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035307	positive regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040024	dauer larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042326	negative regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042343	indole glucosinolate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0042771	intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043550	regulation of lipid kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043934	sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044773	mitotic DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044819	mitotic G1/S transition checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045824	negative regulation of innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045834	positive regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045923	positive regulation of fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045937	positive regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046320	regulation of fatty acid oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046321	positive regulation of fatty acid oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046626	regulation of insulin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046627	negative regulation of insulin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0047484	regulation of response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0048236	plant-type sporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050777	negative regulation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050994	regulation of lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050996	positive regulation of lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051321	meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051348	negative regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0072331	signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	IEP	Predict GO terms from Neighborhoods
MF	GO:0072542	protein phosphatase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080183	response to photooxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0090219	negative regulation of lipid kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090342	obsolete regulation of cell aging	IEP	Predict GO terms from Neighborhoods
BP	GO:0090567	reproductive shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0097190	apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0097193	intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Predict GO terms from Neighborhoods
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1900055	regulation of leaf senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:1900056	negative regulation of leaf senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:1900076	regulation of cellular response to insulin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900077	negative regulation of cellular response to insulin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900457	regulation of brassinosteroid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1900458	negative regulation of brassinosteroid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901000	regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901002	positive regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902806	regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902807	negative regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1903076	regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903077	negative regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:1903293	phosphatase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903828	negative regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903863	P granule assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1904375	regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1904376	negative regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1905475	regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1905476	negative regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000045	regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	5	45
IPR036047	F-box-like_dom_sf	7	41

External Links

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SOLTUB.AGRIA.G00000012294

Expression Profile

Co-expression Networks

Functional Annotation