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  5. SOLTUB.AGRIA.G00000012379

SOLTUB.AGRIA.G00000012379


Description : Uv excision repair protein rad23, putative


Gene families : OG_02_0013891 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012379
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_238


Type GO Term Name Evidence Source
BP GO:0000715 nucleotide-excision repair, DNA damage recognition IEA AHRD
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
MF GO:0003684 damaged DNA binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0010033 response to organic substance IEA AHRD
MF GO:0019900 kinase binding IEA AHRD
MF GO:0031593 polyubiquitin modification-dependent protein binding IEA AHRD
BP GO:0031648 protein destabilization IEA AHRD
BP GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA AHRD
CC GO:0034451 centriolar satellite IEA AHRD
MF GO:0043130 ubiquitin binding IEA AHRD
BP GO:0045070 positive regulation of viral genome replication IEA AHRD
BP GO:0045787 positive regulation of cell cycle IEA AHRD
BP GO:0048568 embryonic organ development IEA AHRD
MF GO:0070628 proteasome binding IEA AHRD
CC GO:0071942 XPC complex IEA AHRD
MF GO:1990381 ubiquitin-specific protease binding IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000314 organellar small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000338 protein deneddylation IEP Predict GO terms from Neighborhoods
BP GO:0000354 cis assembly of pre-catalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0000923 equatorial microtubule organizing center IEP Predict GO terms from Neighborhoods
CC GO:0000930 gamma-tubulin complex IEP Predict GO terms from Neighborhoods
CC GO:0001650 fibrillar center IEP Predict GO terms from Neighborhoods
BP GO:0001667 ameboidal-type cell migration IEP Predict GO terms from Neighborhoods
BP GO:0001755 neural crest cell migration IEP Predict GO terms from Neighborhoods
BP GO:0001952 regulation of cell-matrix adhesion IEP Predict GO terms from Neighborhoods
BP GO:0001953 negative regulation of cell-matrix adhesion IEP Predict GO terms from Neighborhoods
BP GO:0002064 epithelial cell development IEP Predict GO terms from Neighborhoods
BP GO:0002791 regulation of peptide secretion IEP Predict GO terms from Neighborhoods
BP GO:0002793 positive regulation of peptide secretion IEP Predict GO terms from Neighborhoods
MF GO:0002953 5'-deoxynucleotidase activity IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004407 histone deacetylase activity IEP Predict GO terms from Neighborhoods
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005763 mitochondrial small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0006085 acetyl-CoA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006086 acetyl-CoA biosynthetic process from pyruvate IEP Predict GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0006848 pyruvate transport IEP Predict GO terms from Neighborhoods
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0007020 microtubule nucleation IEP Predict GO terms from Neighborhoods
BP GO:0007162 negative regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0007229 integrin-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007282 cystoblast division IEP Predict GO terms from Neighborhoods
BP GO:0007530 sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007538 primary sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007539 primary sex determination, soma IEP Predict GO terms from Neighborhoods
BP GO:0007542 primary sex determination, germ-line IEP Predict GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Predict GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Predict GO terms from Neighborhoods
CC GO:0008180 COP9 signalosome IEP Predict GO terms from Neighborhoods
BP GO:0008406 gonad development IEP Predict GO terms from Neighborhoods
BP GO:0008584 male gonad development IEP Predict GO terms from Neighborhoods
BP GO:0009125 nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009159 deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009409 response to cold IEP Predict GO terms from Neighborhoods
MF GO:0009931 calcium-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0010332 response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0010359 regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:0010360 negative regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:0010387 COP9 signalosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010499 proteasomal ubiquitin-independent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0010721 negative regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0010762 regulation of fibroblast migration IEP Predict GO terms from Neighborhoods
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010771 negative regulation of cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010810 regulation of cell-substrate adhesion IEP Predict GO terms from Neighborhoods
BP GO:0010812 negative regulation of cell-substrate adhesion IEP Predict GO terms from Neighborhoods
MF GO:0010857 calcium-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0010959 regulation of metal ion transport IEP Predict GO terms from Neighborhoods
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0010976 positive regulation of neuron projection development IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Predict GO terms from Neighborhoods
BP GO:0016584 obsolete nucleosome positioning IEP Predict GO terms from Neighborhoods
CC GO:0016605 PML body IEP Predict GO terms from Neighborhoods
MF GO:0017025 TBP-class protein binding IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0018992 germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019099 female germ-line sex determination IEP Predict GO terms from Neighborhoods
MF GO:0019213 deacetylase activity IEP Predict GO terms from Neighborhoods
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predict GO terms from Neighborhoods
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Predict GO terms from Neighborhoods
BP GO:0022414 reproductive process IEP Predict GO terms from Neighborhoods
BP GO:0022604 regulation of cell morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0022898 regulation of transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0030017 sarcomere IEP Predict GO terms from Neighborhoods
BP GO:0030237 female sex determination IEP Predict GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Predict GO terms from Neighborhoods
BP GO:0030278 regulation of ossification IEP Predict GO terms from Neighborhoods
MF GO:0030331 nuclear estrogen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0030500 regulation of bone mineralization IEP Predict GO terms from Neighborhoods
MF GO:0030619 U1 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030620 U2 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0030707 ovarian follicle cell development IEP Predict GO terms from Neighborhoods
BP GO:0030718 germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
CC GO:0031304 intrinsic component of mitochondrial inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0031305 integral component of mitochondrial inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
MF GO:0031492 nucleosomal DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0031624 ubiquitin conjugating enzyme binding IEP Predict GO terms from Neighborhoods
CC GO:0031901 early endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0031936 obsolete negative regulation of chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0032024 positive regulation of insulin secretion IEP Predict GO terms from Neighborhoods
MF GO:0032183 SUMO binding IEP Predict GO terms from Neighborhoods
MF GO:0032184 SUMO polymer binding IEP Predict GO terms from Neighborhoods
BP GO:0032355 response to estradiol IEP Predict GO terms from Neighborhoods
BP GO:0032409 regulation of transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032410 negative regulation of transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032412 regulation of ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032413 negative regulation of ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032543 mitochondrial translation IEP Predict GO terms from Neighborhoods
CC GO:0032592 integral component of mitochondrial membrane IEP Predict GO terms from Neighborhoods
MF GO:0033142 nuclear progesterone receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0033558 protein lysine deacetylase activity IEP Predict GO terms from Neighborhoods
BP GO:0033574 response to testosterone IEP Predict GO terms from Neighborhoods
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034260 negative regulation of GTPase activity IEP Predict GO terms from Neighborhoods
CC GO:0034399 nuclear periphery IEP Predict GO terms from Neighborhoods
MF GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0034501 protein localization to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
CC GO:0034506 chromosome, centromeric core domain IEP Predict GO terms from Neighborhoods
CC GO:0034515 proteasome storage granule IEP Predict GO terms from Neighborhoods
BP GO:0034698 response to gonadotropin IEP Predict GO terms from Neighborhoods
BP GO:0034762 regulation of transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034765 regulation of ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0035384 thioester biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
MF GO:0035614 snRNA stem-loop binding IEP Predict GO terms from Neighborhoods
BP GO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0036099 female germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0042113 B cell activation IEP Predict GO terms from Neighborhoods
CC GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network IEP Predict GO terms from Neighborhoods
MF GO:0043015 gamma-tubulin binding IEP Predict GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043266 regulation of potassium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0043267 negative regulation of potassium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0043269 regulation of ion transport IEP Predict GO terms from Neighborhoods
BP GO:0043547 positive regulation of GTPase activity IEP Predict GO terms from Neighborhoods
BP GO:0044070 regulation of anion transport IEP Predict GO terms from Neighborhoods
MF GO:0044390 ubiquitin-like protein conjugating enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0044752 response to human chorionic gonadotropin IEP Predict GO terms from Neighborhoods
BP GO:0045910 negative regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0046883 regulation of hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0046887 positive regulation of hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0048138 germ-line cyst encapsulation IEP Predict GO terms from Neighborhoods
BP GO:0048140 male germ-line cyst encapsulation IEP Predict GO terms from Neighborhoods
BP GO:0048142 germarium-derived cystoblast division IEP Predict GO terms from Neighborhoods
BP GO:0048609 multicellular organismal reproductive process IEP Predict GO terms from Neighborhoods
MF GO:0050681 nuclear androgen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0050714 positive regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0050796 regulation of insulin secretion IEP Predict GO terms from Neighborhoods
MF GO:0050833 pyruvate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0051011 microtubule minus-end binding IEP Predict GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Predict GO terms from Neighborhoods
CC GO:0051233 spindle midzone IEP Predict GO terms from Neighborhoods
BP GO:0051336 regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051893 regulation of focal adhesion assembly IEP Predict GO terms from Neighborhoods
BP GO:0051895 negative regulation of focal adhesion assembly IEP Predict GO terms from Neighborhoods
BP GO:0051984 positive regulation of chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0051987 positive regulation of attachment of spindle microtubules to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0051988 regulation of attachment of spindle microtubules to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0060491 regulation of cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0061178 regulation of insulin secretion involved in cellular response to glucose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0061732 mitochondrial acetyl-CoA biosynthetic process from pyruvate IEP Predict GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Predict GO terms from Neighborhoods
BP GO:0070167 regulation of biomineral tissue development IEP Predict GO terms from Neighborhoods
BP GO:0070534 protein K63-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0070868 obsolete heterochromatin organization involved in chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0070979 protein K11-linked ubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0070990 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071243 cellular response to arsenic-containing substance IEP Predict GO terms from Neighborhoods
BP GO:0071394 cellular response to testosterone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071459 protein localization to chromosome, centromeric region IEP Predict GO terms from Neighborhoods
BP GO:0071479 cellular response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0071616 acyl-CoA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0072356 chromosome passenger complex localization to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0072710 response to hydroxyurea IEP Predict GO terms from Neighborhoods
BP GO:0072711 cellular response to hydroxyurea IEP Predict GO terms from Neighborhoods
BP GO:0085020 protein K6-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0090087 regulation of peptide transport IEP Predict GO terms from Neighborhoods
BP GO:0090109 regulation of cell-substrate junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0090169 regulation of spindle assembly IEP Predict GO terms from Neighborhoods
BP GO:0090224 regulation of spindle organization IEP Predict GO terms from Neighborhoods
BP GO:0090230 regulation of centromere complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0090234 regulation of kinetochore assembly IEP Predict GO terms from Neighborhoods
BP GO:0090276 regulation of peptide hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0090277 positive regulation of peptide hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0090497 mesenchymal cell migration IEP Predict GO terms from Neighborhoods
BP GO:0090630 activation of GTPase activity IEP Predict GO terms from Neighborhoods
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0110149 regulation of biomineralization IEP Predict GO terms from Neighborhoods
BP GO:0120032 regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0120035 regulation of plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0140297 DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0150116 regulation of cell-substrate junction organization IEP Predict GO terms from Neighborhoods
BP GO:0150118 negative regulation of cell-substrate junction organization IEP Predict GO terms from Neighborhoods
BP GO:1900024 regulation of substrate adhesion-dependent cell spreading IEP Predict GO terms from Neighborhoods
BP GO:1900025 negative regulation of substrate adhesion-dependent cell spreading IEP Predict GO terms from Neighborhoods
BP GO:1900027 regulation of ruffle assembly IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1901016 regulation of potassium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1901017 negative regulation of potassium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1901379 regulation of potassium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1901380 negative regulation of potassium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1901475 pyruvate transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1901655 cellular response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1901888 regulation of cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:1901889 negative regulation of cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:1901979 regulation of inward rectifier potassium channel activity IEP Predict GO terms from Neighborhoods
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903083 protein localization to condensed chromosome IEP Predict GO terms from Neighborhoods
BP GO:1903792 negative regulation of anion transport IEP Predict GO terms from Neighborhoods
BP GO:1903959 regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1903960 negative regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904062 regulation of cation transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904063 negative regulation of cation transmembrane transport IEP Predict GO terms from Neighborhoods
CC GO:1990023 mitotic spindle midzone IEP Predict GO terms from Neighborhoods
MF GO:1990446 U1 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:1990752 microtubule end IEP Predict GO terms from Neighborhoods
BP GO:2000014 regulation of endosperm development IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004806 Rad23 1 365
IPR015940 UBA 142 180
IPR015940 UBA 322 358
IPR015360 XPC-bd 242 297
IPR029071 Ubiquitin-like_domsf 1 90
IPR009060 UBA-like_sf 139 190
IPR036353 XPC-bd_sf 239 305
IPR000626 Ubiquitin-like_dom 3 76
IPR009060 UBA-like_sf 301 364
No external refs found!