SOLTUB.AGRIA.G00000012446

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0022432 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012446
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_62

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0010214	seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016554	cytidine to uridine editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0080156	mitochondrial mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0140547	acquisition of seed longevity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1900865	chloroplast RNA modification	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	204	251
IPR002885	Pentatricopeptide_repeat	342	391
IPR002885	Pentatricopeptide_repeat	831	879
IPR002885	Pentatricopeptide_repeat	517	557
IPR002885	Pentatricopeptide_repeat	587	636
IPR002885	Pentatricopeptide_repeat	657	706
IPR002885	Pentatricopeptide_repeat	727	776
IPR002885	Pentatricopeptide_repeat	412	461
IPR002885	Pentatricopeptide_repeat	272	321
IPR011990	TPR-like_helical_dom_sf	236	508
IPR002885	Pentatricopeptide_repeat	897	928
IPR002885	Pentatricopeptide_repeat	799	824
IPR002885	Pentatricopeptide_repeat	486	515
IPR002885	Pentatricopeptide_repeat	176	200
IPR002885	Pentatricopeptide_repeat	834	867
IPR002885	Pentatricopeptide_repeat	660	694
IPR002885	Pentatricopeptide_repeat	800	832
IPR002885	Pentatricopeptide_repeat	346	378
IPR002885	Pentatricopeptide_repeat	904	934
IPR002885	Pentatricopeptide_repeat	869	903
IPR002885	Pentatricopeptide_repeat	450	483
IPR002885	Pentatricopeptide_repeat	275	309
IPR002885	Pentatricopeptide_repeat	627	659
IPR002885	Pentatricopeptide_repeat	486	519
IPR002885	Pentatricopeptide_repeat	590	617
IPR002885	Pentatricopeptide_repeat	240	273
IPR002885	Pentatricopeptide_repeat	310	343
IPR002885	Pentatricopeptide_repeat	520	553
IPR002885	Pentatricopeptide_repeat	766	795
IPR002885	Pentatricopeptide_repeat	381	414
IPR002885	Pentatricopeptide_repeat	416	448
IPR002885	Pentatricopeptide_repeat	555	588
IPR002885	Pentatricopeptide_repeat	695	728
IPR002885	Pentatricopeptide_repeat	730	764

External Links

No external refs found!

SOLTUB.AGRIA.G00000012446

Expression Profile

Co-expression Networks

Functional Annotation