SOLTUB.AGRIA.G00000012943

Description : Phytoene desaturase

Gene families : OG_02_0004533 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012943
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_199

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009509	chromoplast	IEA	AHRD
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009534	chloroplast thylakoid	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009635	response to herbicide	IEA	AHRD
BP	GO:0009636	response to toxic substance	None	Extended
CC	GO:0009941	chloroplast envelope	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016108	tetraterpenoid metabolic process	None	Extended
BP	GO:0016109	tetraterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
BP	GO:0016116	carotenoid metabolic process	None	Extended
BP	GO:0016117	carotenoid biosynthetic process	IEA	AHRD
BP	GO:0016119	carotene metabolic process	None	Extended
BP	GO:0016120	carotene biosynthetic process	IEA	AHRD
MF	GO:0016166	phytoene dehydrogenase activity	IEA	AHRD
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	None	Extended
CC	GO:0019898	extrinsic component of membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031312	extrinsic component of organelle membrane	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0035452	extrinsic component of plastid membrane	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042214	terpene metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046246	terpene biosynthetic process	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051259	protein complex oligomerization	None	Extended
BP	GO:0051260	protein homooligomerization	None	Extended
BP	GO:0051262	protein tetramerization	None	Extended
BP	GO:0051289	protein homotetramerization	IEA	AHRD
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0071949	FAD binding	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003919	FMN adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0005982	starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005985	sucrose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005987	sucrose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006090	pyruvate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006644	phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006747	FAD biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009313	oligosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009543	chloroplast thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009662	etioplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0015926	glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016635	oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016719	carotene 7,8-desaturase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018206	peptidyl-methionine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030604	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031978	plastid thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0042586	peptide deformylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046352	disaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046443	FAD metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046608	carotenoid isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048366	leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048827	phyllome development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050993	dimethylallyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051484	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0052886	9,9'-dicis-carotene:quinone oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052887	7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052889	9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	IEP	Predict GO terms from Neighborhoods
MF	GO:0070402	NADPH binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070566	adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072387	flavin adenine dinucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072388	flavin adenine dinucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0090599	alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predict GO terms from Neighborhoods
BP	GO:0140547	acquisition of seed longevity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901175	lycopene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901177	lycopene biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036188	FAD/NAD-bd_sf	45	279
IPR002937	Amino_oxidase	14	275

External Links

No external refs found!

SOLTUB.AGRIA.G00000012943

Expression Profile

Co-expression Networks

Functional Annotation