Coexpression cluster: Cluster_199 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010020 chloroplast fission 5.77% (3/52) 6.89 2e-06 0.000592
GO:0043572 plastid fission 5.77% (3/52) 6.89 2e-06 0.000592
GO:0043424 protein histidine kinase binding 7.69% (4/52) 5.51 2e-06 0.000878
GO:0050801 ion homeostasis 19.23% (10/52) 2.88 1e-06 0.001135
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 3.85% (2/52) 8.97 5e-06 0.001211
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 3.85% (2/52) 9.55 2e-06 0.001212
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 5.77% (3/52) 6.38 6e-06 0.001266
GO:0019682 glyceraldehyde-3-phosphate metabolic process 5.77% (3/52) 6.14 1.1e-05 0.00187
GO:0071805 potassium ion transmembrane transport 7.69% (4/52) 4.59 2.4e-05 0.003716
GO:0009240 isopentenyl diphosphate biosynthetic process 5.77% (3/52) 5.58 3.5e-05 0.004384
GO:0046490 isopentenyl diphosphate metabolic process 5.77% (3/52) 5.58 3.5e-05 0.004384
GO:0009706 chloroplast inner membrane 7.69% (4/52) 4.37 4.3e-05 0.004598
GO:0015079 potassium ion transmembrane transporter activity 7.69% (4/52) 4.38 4.2e-05 0.004849
GO:0009528 plastid inner membrane 7.69% (4/52) 4.17 7.4e-05 0.007394
GO:0006813 potassium ion transport 7.69% (4/52) 4.1 8.9e-05 0.00827
GO:0042592 homeostatic process 21.15% (11/52) 1.95 9.7e-05 0.008476
GO:0019901 protein kinase binding 11.54% (6/52) 2.96 0.00012 0.009836
GO:0005244 voltage-gated ion channel activity 5.77% (3/52) 4.85 0.000157 0.010466
GO:0022832 voltage-gated channel activity 5.77% (3/52) 4.82 0.00017 0.010769
GO:0031969 chloroplast membrane 9.62% (5/52) 3.33 0.00014 0.010878
GO:0045770 positive regulation of asymmetric cell division 3.85% (2/52) 6.75 0.000156 0.010913
GO:0048878 chemical homeostasis 19.23% (10/52) 2.01 0.000154 0.011349
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 3.85% (2/52) 6.55 0.000206 0.011972
GO:0051302 regulation of cell division 9.62% (5/52) 3.22 0.000198 0.012037
GO:0051781 positive regulation of cell division 5.77% (3/52) 4.65 0.00024 0.013424
GO:1902890 regulation of root hair elongation 3.85% (2/52) 6.31 0.000293 0.015708
GO:0009270 response to humidity 3.85% (2/52) 6.16 0.000359 0.018544
GO:0016120 carotene biosynthetic process 3.85% (2/52) 6.09 0.000394 0.018975
GO:2000030 regulation of response to red or far red light 7.69% (4/52) 3.54 0.000391 0.019513
GO:0009509 chromoplast 3.85% (2/52) 5.97 0.00047 0.020512
GO:0048103 somatic stem cell division 3.85% (2/52) 5.97 0.00047 0.020512
GO:0019899 enzyme binding 19.23% (10/52) 1.81 0.000458 0.021317
GO:0009658 chloroplast organization 9.62% (5/52) 2.91 0.000527 0.022293
GO:0016119 carotene metabolic process 3.85% (2/52) 5.85 0.000553 0.022694
GO:0009786 regulation of asymmetric cell division 3.85% (2/52) 5.75 0.000642 0.024886
GO:0006885 regulation of pH 5.77% (3/52) 4.17 0.000629 0.025098
GO:0055080 cation homeostasis 11.54% (6/52) 2.47 0.000726 0.026674
GO:0022836 gated channel activity 5.77% (3/52) 4.08 0.000753 0.026968
GO:0034285 response to disaccharide 7.69% (4/52) 3.2 0.000949 0.027032
GO:0010099 regulation of photomorphogenesis 5.77% (3/52) 4.11 0.000721 0.027204
GO:0005991 trehalose metabolic process 3.85% (2/52) 5.47 0.000948 0.027559
GO:1902265 abscisic acid homeostasis 3.85% (2/52) 5.51 0.000893 0.027691
GO:0009657 plastid organization 9.62% (5/52) 2.73 0.000935 0.02777
GO:0009744 response to sucrose 7.69% (4/52) 3.21 0.000917 0.02783
GO:0019900 kinase binding 11.54% (6/52) 2.44 0.000803 0.028029
GO:0006561 proline biosynthetic process 3.85% (2/52) 5.42 0.001004 0.028036
GO:0006090 pyruvate metabolic process 5.77% (3/52) 3.93 0.001026 0.028086
GO:0015075 ion transmembrane transporter activity 13.46% (7/52) 2.17 0.000886 0.028124
GO:0042170 plastid membrane 11.54% (6/52) 2.42 0.000849 0.028225
GO:0019866 organelle inner membrane 7.69% (4/52) 3.23 0.000876 0.028432
GO:0015503 glutathione-regulated potassium exporter activity 1.92% (1/52) 9.55 0.00133 0.028571
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 1.92% (1/52) 9.55 0.00133 0.028571
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 1.92% (1/52) 9.55 0.00133 0.028571
GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process 1.92% (1/52) 9.55 0.00133 0.028571
GO:0006747 FAD biosynthetic process 1.92% (1/52) 9.55 0.00133 0.028571
GO:0072388 flavin adenine dinucleotide biosynthetic process 1.92% (1/52) 9.55 0.00133 0.028571
GO:0005992 trehalose biosynthetic process 3.85% (2/52) 5.55 0.000839 0.028575
GO:0005249 voltage-gated potassium channel activity 3.85% (2/52) 5.2 0.001377 0.028688
GO:0031156 regulation of sorocarp development 3.85% (2/52) 5.2 0.001377 0.028688
GO:0045995 regulation of embryonic development 5.77% (3/52) 3.87 0.00115 0.029741
GO:0098771 inorganic ion homeostasis 11.54% (6/52) 2.33 0.001177 0.029866
GO:0046148 pigment biosynthetic process 7.69% (4/52) 3.11 0.001206 0.030073
GO:0016114 terpenoid biosynthetic process 9.62% (5/52) 2.66 0.001149 0.030273
GO:0005984 disaccharide metabolic process 5.77% (3/52) 3.88 0.001129 0.030311
GO:0001216 DNA-binding transcription activator activity 5.77% (3/52) 3.75 0.001477 0.030313
GO:0031155 regulation of reproductive fruiting body development 3.85% (2/52) 5.27 0.001246 0.030524
GO:0075260 regulation of spore-bearing organ development 3.85% (2/52) 5.13 0.001514 0.030624
GO:0055067 monovalent inorganic cation homeostasis 7.69% (4/52) 3.07 0.001325 0.031342
GO:0006560 proline metabolic process 3.85% (2/52) 5.23 0.001311 0.031549
GO:0016109 tetraterpenoid biosynthetic process 3.85% (2/52) 4.94 0.001961 0.034223
GO:0016117 carotenoid biosynthetic process 3.85% (2/52) 4.94 0.001961 0.034223
GO:0005267 potassium channel activity 3.85% (2/52) 4.94 0.001961 0.034223
GO:0034220 ion transmembrane transport 11.54% (6/52) 2.22 0.001752 0.03445
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth 3.85% (2/52) 5.03 0.00173 0.034511
GO:0022843 voltage-gated cation channel activity 3.85% (2/52) 5.0 0.001806 0.035013
GO:0009700 indole phytoalexin biosynthetic process 3.85% (2/52) 4.7 0.002736 0.035362
GO:0010120 camalexin biosynthetic process 3.85% (2/52) 4.7 0.002736 0.035362
GO:0046217 indole phytoalexin metabolic process 3.85% (2/52) 4.7 0.002736 0.035362
GO:0052317 camalexin metabolic process 3.85% (2/52) 4.7 0.002736 0.035362
GO:0009314 response to radiation 21.15% (11/52) 1.44 0.001956 0.035459
GO:0051536 iron-sulfur cluster binding 5.77% (3/52) 3.42 0.002821 0.035474
GO:0051540 metal cluster binding 5.77% (3/52) 3.42 0.002821 0.035474
GO:0048317 seed morphogenesis 3.85% (2/52) 4.97 0.001883 0.035518
GO:0051048 negative regulation of secretion 3.85% (2/52) 4.97 0.001883 0.035518
GO:0030001 metal ion transport 9.62% (5/52) 2.49 0.001936 0.03557
GO:0006081 cellular aldehyde metabolic process 5.77% (3/52) 3.42 0.002783 0.035645
GO:0006972 hyperosmotic response 7.69% (4/52) 2.89 0.002076 0.035787
GO:0009642 response to light intensity 9.62% (5/52) 2.49 0.001924 0.03581
GO:0003674 molecular_function 78.85% (41/52) 0.4 0.002877 0.035862
GO:0080060 integument development 3.85% (2/52) 4.65 0.002924 0.036128
GO:0042440 pigment metabolic process 7.69% (4/52) 2.75 0.002962 0.036272
GO:0006970 response to osmotic stress 17.31% (9/52) 1.58 0.002708 0.036346
GO:0016719 carotene 7,8-desaturase activity 1.92% (1/52) 8.55 0.002659 0.036391
GO:0052886 9,9'-dicis-carotene:quinone oxidoreductase activity 1.92% (1/52) 8.55 0.002659 0.036391
GO:0052887 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity 1.92% (1/52) 8.55 0.002659 0.036391
GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 1.92% (1/52) 8.55 0.002659 0.036391
GO:0047590 5-dehydro-2-deoxygluconokinase activity 1.92% (1/52) 8.55 0.002659 0.036391
GO:0046443 FAD metabolic process 1.92% (1/52) 8.55 0.002659 0.036391
GO:1902586 obsolete multi-organism intercellular transport 1.92% (1/52) 8.55 0.002659 0.036391
GO:1904978 regulation of endosome organization 1.92% (1/52) 8.55 0.002659 0.036391
GO:1904979 negative regulation of endosome organization 1.92% (1/52) 8.55 0.002659 0.036391
GO:1905365 regulation of intralumenal vesicle formation 1.92% (1/52) 8.55 0.002659 0.036391
GO:1905366 negative regulation of intralumenal vesicle formation 1.92% (1/52) 8.55 0.002659 0.036391
GO:0031352 intrinsic component of plastid inner membrane 1.92% (1/52) 8.55 0.002659 0.036391
GO:0031353 integral component of plastid inner membrane 1.92% (1/52) 8.55 0.002659 0.036391
GO:0031356 intrinsic component of chloroplast inner membrane 1.92% (1/52) 8.55 0.002659 0.036391
GO:0031357 integral component of chloroplast inner membrane 1.92% (1/52) 8.55 0.002659 0.036391
GO:0008610 lipid biosynthetic process 15.38% (8/52) 1.72 0.002694 0.036519
GO:0046351 disaccharide biosynthetic process 3.85% (2/52) 4.62 0.003021 0.036672
GO:0009311 oligosaccharide metabolic process 5.77% (3/52) 3.36 0.003132 0.037692
GO:0031224 intrinsic component of membrane 23.08% (12/52) 1.33 0.002224 0.037864
GO:0005215 transporter activity 15.38% (8/52) 1.75 0.002317 0.03806
GO:0048829 root cap development 3.85% (2/52) 4.83 0.00229 0.038063
GO:0046873 metal ion transmembrane transporter activity 7.69% (4/52) 2.86 0.002268 0.038145
GO:0099094 ligand-gated cation channel activity 3.85% (2/52) 4.8 0.002376 0.038574
GO:0016021 integral component of membrane 21.15% (11/52) 1.4 0.002411 0.038694
GO:0017145 stem cell division 3.85% (2/52) 4.55 0.00332 0.039607
GO:0009743 response to carbohydrate 9.62% (5/52) 2.29 0.003505 0.040109
GO:0015276 ligand-gated ion channel activity 3.85% (2/52) 4.53 0.003422 0.040144
GO:0022834 ligand-gated channel activity 3.85% (2/52) 4.53 0.003422 0.040144
GO:0006811 ion transport 13.46% (7/52) 1.82 0.003482 0.040174
GO:0005216 ion channel activity 5.77% (3/52) 3.31 0.003464 0.040295
GO:0043168 anion binding 21.15% (11/52) 1.32 0.003643 0.041015
GO:0009084 glutamine family amino acid biosynthetic process 3.85% (2/52) 4.49 0.003631 0.041215
GO:0050992 dimethylallyl diphosphate biosynthetic process 1.92% (1/52) 7.97 0.003986 0.041216
GO:0035452 extrinsic component of plastid membrane 1.92% (1/52) 7.97 0.003986 0.041216
GO:0003919 FMN adenylyltransferase activity 1.92% (1/52) 7.97 0.003986 0.041216
GO:0007174 epidermal growth factor catabolic process 1.92% (1/52) 7.97 0.003986 0.041216
GO:0022615 protein to membrane docking 1.92% (1/52) 7.97 0.003986 0.041216
GO:0045453 bone resorption 1.92% (1/52) 7.97 0.003986 0.041216
GO:0098662 inorganic cation transmembrane transport 7.69% (4/52) 2.63 0.004018 0.041248
GO:0006721 terpenoid metabolic process 9.62% (5/52) 2.24 0.004079 0.041567
GO:0044255 cellular lipid metabolic process 17.31% (9/52) 1.49 0.004131 0.041786
GO:0009987 cellular process 71.15% (37/52) 0.45 0.004214 0.042325
GO:0015297 antiporter activity 5.77% (3/52) 3.26 0.003816 0.042619
GO:0006644 phospholipid metabolic process 7.69% (4/52) 2.63 0.00396 0.042857
GO:0016108 tetraterpenoid metabolic process 3.85% (2/52) 4.42 0.003956 0.043149
GO:0016116 carotenoid metabolic process 3.85% (2/52) 4.42 0.003956 0.043149
GO:0030670 phagocytic vesicle membrane 3.85% (2/52) 4.42 0.003956 0.043149
GO:0090333 regulation of stomatal closure 5.77% (3/52) 3.19 0.004385 0.043412
GO:0048285 organelle fission 5.77% (3/52) 3.19 0.004385 0.043412
GO:0009416 response to light stimulus 19.23% (10/52) 1.37 0.00458 0.045022
GO:0042547 cell wall modification involved in multidimensional cell growth 3.85% (2/52) 4.31 0.004645 0.045033
GO:0001894 tissue homeostasis 3.85% (2/52) 4.31 0.004645 0.045033
GO:0019725 cellular homeostasis 9.62% (5/52) 2.19 0.004694 0.045191
GO:0006629 lipid metabolic process 19.23% (10/52) 1.35 0.004875 0.046616
GO:0008654 phospholipid biosynthetic process 5.77% (3/52) 3.13 0.004949 0.046996
GO:0000166 nucleotide binding 23.08% (12/52) 1.18 0.0051 0.047784
GO:1901265 nucleoside phosphate binding 23.08% (12/52) 1.18 0.0051 0.047784
GO:0061724 lipophagy 1.92% (1/52) 7.55 0.005311 0.048458
GO:0008794 arsenate reductase (glutaredoxin) activity 1.92% (1/52) 7.55 0.005311 0.048458
GO:0030613 oxidoreductase activity, acting on phosphorus or arsenic in donors 1.92% (1/52) 7.55 0.005311 0.048458
GO:0030614 oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor 1.92% (1/52) 7.55 0.005311 0.048458
GO:0009312 oligosaccharide biosynthetic process 3.85% (2/52) 4.2 0.005386 0.048819
GO:0044262 cellular carbohydrate metabolic process 9.62% (5/52) 2.14 0.005478 0.049339
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_216 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_222 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_7 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_18 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_150 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_177 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_196 0.011 Orthogroups with 8 Potato genotypes Compare
Sequences (52) (download table)

InterPro Domains

GO Terms

Family Terms