SOLTUB.AGRIA.G00000013012

Description : MADS-box transcription factor

Gene families : OG_02_0002929 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013012
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_153

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA	AHRD
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001708	cell fate specification	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
MF	GO:0008134	transcription factor binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010022	meristem determinacy	None	Extended
BP	GO:0010074	maintenance of meristem identity	None	Extended
BP	GO:0010076	maintenance of floral meristem identity	IEA	AHRD
BP	GO:0010093	specification of floral organ identity	IEA	AHRD
BP	GO:0010214	seed coat development	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010582	floral meristem determinacy	IEA	AHRD
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019827	stem cell population maintenance	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
MF	GO:0046983	protein dimerization activity	IEA	AHRD
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048441	petal development	IEA	AHRD
BP	GO:0048442	sepal development	IEA	AHRD
BP	GO:0048443	stamen development	IEA	AHRD
BP	GO:0048481	plant ovule development	IEA	AHRD
BP	GO:0048509	regulation of meristem development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048832	specification of plant organ number	None	Extended
BP	GO:0048833	specification of floral organ number	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080001	mucilage extrusion from seed coat	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006244	pyrimidine nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006253	dCTP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007154	cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009149	pyrimidine nucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009166	nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009211	pyrimidine deoxyribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009213	pyrimidine deoxyribonucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009223	pyrimidine deoxyribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009264	deoxyribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009991	response to extracellular stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0019103	pyrimidine nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0032552	deoxyribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032556	pyrimidine deoxyribonucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042262	DNA protection	IEP	Predict GO terms from Neighborhoods
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046065	dCTP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046386	deoxyribose phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046434	organophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046700	heterocycle catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047429	nucleoside triphosphate diphosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047840	dCTP diphosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071496	cellular response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	85	171
IPR036879	TF_MADSbox_sf	2	85
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

SOLTUB.AGRIA.G00000013012

Expression Profile

Co-expression Networks

Functional Annotation