Coexpression cluster: Cluster_153 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0065007 biological regulation 63.22% (55/87) 0.78 0.0 0.000983
GO:0050789 regulation of biological process 58.62% (51/87) 0.8 1e-06 0.001544
GO:0048583 regulation of response to stimulus 32.18% (28/87) 1.25 6e-06 0.004646
GO:0048364 root development 13.79% (12/87) 2.21 1.1e-05 0.00574
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 8.05% (7/87) 3.16 1.5e-05 0.006281
GO:0004674 protein serine/threonine kinase activity 13.79% (12/87) 1.99 4.6e-05 0.009021
GO:0015211 purine nucleoside transmembrane transporter activity 3.45% (3/87) 5.44 4.6e-05 0.009898
GO:0055085 transmembrane transport 14.94% (13/87) 1.86 5.6e-05 0.010089
GO:0016301 kinase activity 17.24% (15/87) 1.67 6.2e-05 0.010376
GO:0006468 protein phosphorylation 14.94% (13/87) 1.89 4.4e-05 0.010476
GO:0033810 anthocyanin 5-O-glucoside 6'''-O-malonyltransferase activity 2.3% (2/87) 7.23 7.3e-05 0.010531
GO:0004672 protein kinase activity 16.09% (14/87) 1.82 3.9e-05 0.010548
GO:0005337 nucleoside transmembrane transporter activity 3.45% (3/87) 5.19 7.8e-05 0.01059
GO:0005515 protein binding 58.62% (51/87) 0.63 6.9e-05 0.010609
GO:0022857 transmembrane transporter activity 14.94% (13/87) 1.79 9.1e-05 0.010967
GO:0016310 phosphorylation 16.09% (14/87) 1.71 8.7e-05 0.011085
GO:0003674 molecular_function 80.46% (70/87) 0.43 3.1e-05 0.011238
GO:0016773 phosphotransferase activity, alcohol group as acceptor 16.09% (14/87) 1.69 9.9e-05 0.011305
GO:0009914 hormone transport 8.05% (7/87) 2.94 3.8e-05 0.011832
GO:0048646 anatomical structure formation involved in morphogenesis 13.79% (12/87) 1.86 0.000114 0.012303
GO:0046700 heterocycle catabolic process 8.05% (7/87) 2.53 0.000215 0.012931
GO:0051179 localization 28.74% (25/87) 1.1 0.000127 0.013047
GO:0005575 cellular_component 79.31% (69/87) 0.38 0.000212 0.013082
GO:0009967 positive regulation of signal transduction 11.49% (10/87) 2.07 0.000134 0.013146
GO:0044270 cellular nitrogen compound catabolic process 8.05% (7/87) 2.54 0.00021 0.013388
GO:0007154 cell communication 12.64% (11/87) 1.88 0.000195 0.013621
GO:0048518 positive regulation of biological process 33.33% (29/87) 0.95 0.00021 0.013765
GO:0015103 inorganic anion transmembrane transporter activity 5.75% (5/87) 3.27 0.000179 0.013827
GO:0099402 plant organ development 16.09% (14/87) 1.59 0.000206 0.013894
GO:0047165 flavonol-3-O-beta-glucoside O-malonyltransferase activity 2.3% (2/87) 6.64 0.000175 0.013981
GO:0050736 O-malonyltransferase activity 2.3% (2/87) 6.64 0.000175 0.013981
GO:0016772 transferase activity, transferring phosphorus-containing groups 17.24% (15/87) 1.53 0.000188 0.014042
GO:0009605 response to external stimulus 36.78% (32/87) 0.88 0.000195 0.014062
GO:0023056 positive regulation of signaling 11.49% (10/87) 1.96 0.000249 0.014173
GO:0050794 regulation of cellular process 47.13% (41/87) 0.69 0.000302 0.014203
GO:0072530 purine-containing compound transmembrane transport 3.45% (3/87) 4.64 0.000243 0.014225
GO:0035445 borate transmembrane transport 2.3% (2/87) 6.23 0.000319 0.014355
GO:0002682 regulation of immune system process 13.79% (12/87) 1.69 0.000326 0.014412
GO:0006810 transport 25.29% (22/87) 1.19 0.00016 0.014421
GO:0051234 establishment of localization 25.29% (22/87) 1.12 0.000301 0.01448
GO:0015851 nucleobase transport 3.45% (3/87) 4.51 0.000316 0.01456
GO:0005215 transporter activity 14.94% (13/87) 1.71 0.000155 0.014605
GO:0006863 purine nucleobase transport 3.45% (3/87) 4.54 0.000301 0.014786
GO:0010647 positive regulation of cell communication 11.49% (10/87) 1.94 0.000274 0.014817
GO:0010184 cytokinin transport 3.45% (3/87) 4.81 0.000171 0.014823
GO:0110165 cellular anatomical entity 78.16% (68/87) 0.38 0.000289 0.014898
GO:0005345 purine nucleobase transmembrane transporter activity 3.45% (3/87) 4.59 0.000271 0.015034
GO:0006796 phosphate-containing compound metabolic process 20.69% (18/87) 1.29 0.000299 0.015045
GO:0015205 nucleobase transmembrane transporter activity 3.45% (3/87) 4.56 0.000286 0.015071
GO:0042221 response to chemical 41.38% (36/87) 0.76 0.000355 0.015352
GO:0006793 phosphorus metabolic process 20.69% (18/87) 1.27 0.000368 0.015619
GO:0016420 malonyltransferase activity 2.3% (2/87) 6.11 0.000376 0.015637
GO:0009991 response to extracellular stimulus 12.64% (11/87) 1.74 0.000438 0.017861
GO:0048584 positive regulation of response to stimulus 17.24% (15/87) 1.41 0.000454 0.018195
GO:0140096 catalytic activity, acting on a protein 22.99% (20/87) 1.15 0.00047 0.018502
GO:0046777 protein autophosphorylation 10.34% (9/87) 1.95 0.000532 0.020554
GO:0031668 cellular response to extracellular stimulus 10.34% (9/87) 1.95 0.000547 0.020753
GO:0009986 cell surface 4.6% (4/87) 3.34 0.000689 0.025707
GO:0008150 biological_process 78.16% (68/87) 0.35 0.000713 0.025717
GO:0070887 cellular response to chemical stimulus 18.39% (16/87) 1.29 0.000705 0.025852
GO:1901333 positive regulation of lateral root development 2.3% (2/87) 5.64 0.000732 0.025959
GO:0071496 cellular response to external stimulus 10.34% (9/87) 1.88 0.000757 0.026396
GO:0046715 active borate transmembrane transporter activity 2.3% (2/87) 5.49 0.000907 0.031123
GO:0019439 aromatic compound catabolic process 8.05% (7/87) 2.17 0.000979 0.033091
GO:0036211 protein modification process 21.84% (19/87) 1.1 0.001037 0.0345
GO:0009987 cellular process 68.97% (60/87) 0.4 0.001101 0.034511
GO:0046713 borate transport 2.3% (2/87) 5.35 0.001099 0.034956
GO:0007498 mesoderm development 2.3% (2/87) 5.35 0.001099 0.034956
GO:0048856 anatomical structure development 34.48% (30/87) 0.79 0.001072 0.035142
GO:0010033 response to organic substance 32.18% (28/87) 0.82 0.001173 0.03523
GO:0046386 deoxyribose phosphate catabolic process 2.3% (2/87) 5.29 0.001202 0.035611
GO:0012505 endomembrane system 6.9% (6/87) 2.35 0.001173 0.035724
GO:0005886 plasma membrane 26.44% (23/87) 0.95 0.001159 0.035818
GO:0080134 regulation of response to stress 18.39% (16/87) 1.21 0.001272 0.036691
GO:0032502 developmental process 42.53% (37/87) 0.65 0.001267 0.037021
GO:0051716 cellular response to stimulus 27.59% (24/87) 0.91 0.001385 0.037436
GO:0048522 positive regulation of cellular process 26.44% (23/87) 0.93 0.001373 0.037601
GO:0009966 regulation of signal transduction 17.24% (15/87) 1.25 0.001363 0.037793
GO:0009264 deoxyribonucleotide catabolic process 2.3% (2/87) 5.17 0.001421 0.037946
GO:0050896 response to stimulus 55.17% (48/87) 0.51 0.001359 0.038169
GO:0050776 regulation of immune response 11.49% (10/87) 1.64 0.001348 0.038354
GO:0009926 auxin polar transport 4.6% (4/87) 3.04 0.001484 0.038664
GO:0008356 asymmetric cell division 3.45% (3/87) 3.75 0.001474 0.038871
GO:0010817 regulation of hormone levels 11.49% (10/87) 1.62 0.001539 0.039632
GO:1901361 organic cyclic compound catabolic process 8.05% (7/87) 2.04 0.001603 0.040784
GO:0055121 response to high fluence blue light stimulus by blue high-fluence system 1.15% (1/87) 8.81 0.002226 0.042231
GO:0009358 polyphosphate kinase complex 1.15% (1/87) 8.81 0.002226 0.042231
GO:0030476 ascospore wall assembly 1.15% (1/87) 8.81 0.002226 0.042231
GO:0042244 spore wall assembly 1.15% (1/87) 8.81 0.002226 0.042231
GO:0007280 pole cell migration 1.15% (1/87) 8.81 0.002226 0.042231
GO:0007506 gonadal mesoderm development 1.15% (1/87) 8.81 0.002226 0.042231
GO:0050855 regulation of B cell receptor signaling pathway 1.15% (1/87) 8.81 0.002226 0.042231
GO:0050861 positive regulation of B cell receptor signaling pathway 1.15% (1/87) 8.81 0.002226 0.042231
GO:0051344 negative regulation of cyclic-nucleotide phosphodiesterase activity 1.15% (1/87) 8.81 0.002226 0.042231
GO:0071578 zinc ion import across plasma membrane 1.15% (1/87) 8.81 0.002226 0.042231
GO:1903613 regulation of protein tyrosine phosphatase activity 1.15% (1/87) 8.81 0.002226 0.042231
GO:1903615 positive regulation of protein tyrosine phosphatase activity 1.15% (1/87) 8.81 0.002226 0.042231
GO:0007160 cell-matrix adhesion 1.15% (1/87) 8.81 0.002226 0.042231
GO:0014012 peripheral nervous system axon regeneration 1.15% (1/87) 8.81 0.002226 0.042231
GO:0031102 neuron projection regeneration 1.15% (1/87) 8.81 0.002226 0.042231
GO:0031103 axon regeneration 1.15% (1/87) 8.81 0.002226 0.042231
GO:0033689 negative regulation of osteoblast proliferation 1.15% (1/87) 8.81 0.002226 0.042231
GO:0097442 CA3 pyramidal cell dendrite 1.15% (1/87) 8.81 0.002226 0.042231
GO:0098966 perisynaptic extracellular matrix 1.15% (1/87) 8.81 0.002226 0.042231
GO:1905239 regulation of canonical Wnt signaling pathway involved in osteoblast differentiation 1.15% (1/87) 8.81 0.002226 0.042231
GO:1905240 negative regulation of canonical Wnt signaling pathway involved in osteoblast differentiation 1.15% (1/87) 8.81 0.002226 0.042231
GO:1990026 hippocampal mossy fiber expansion 1.15% (1/87) 8.81 0.002226 0.042231
GO:0004530 deoxyribonuclease I activity 1.15% (1/87) 8.81 0.002226 0.042231
GO:1903338 regulation of cell wall organization or biogenesis 4.6% (4/87) 2.87 0.002264 0.042587
GO:0034655 nucleobase-containing compound catabolic process 5.75% (5/87) 2.44 0.002337 0.043199
GO:2000214 regulation of proline metabolic process 2.3% (2/87) 4.81 0.002326 0.043367
GO:0071702 organic substance transport 14.94% (13/87) 1.32 0.001918 0.047147
GO:0048869 cellular developmental process 17.24% (15/87) 1.21 0.001876 0.047172
GO:0005488 binding 65.52% (57/87) 0.39 0.002576 0.047221
GO:0033212 iron import into cell 2.3% (2/87) 4.95 0.001912 0.047537
GO:0000820 regulation of glutamine family amino acid metabolic process 2.3% (2/87) 4.72 0.002623 0.047676
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 5.75% (5/87) 2.5 0.001991 0.047855
GO:0071495 cellular response to endogenous stimulus 9.2% (8/87) 1.82 0.001974 0.047983
GO:0050793 regulation of developmental process 21.84% (19/87) 0.98 0.002729 0.049191
GO:0071310 cellular response to organic substance 11.49% (10/87) 1.5 0.002769 0.049496
GO:0023051 regulation of signaling 17.24% (15/87) 1.15 0.002794 0.049544
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_228 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_229 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_53 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_145 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (87) (download table)

InterPro Domains

GO Terms

Family Terms