SOLTUB.AGRIA.G00000013054

Description : Arf guanine-nucleotide exchange factor gnom

Gene families : OG_02_0002118 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013054
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_247

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	IEA	AHRD
BP	GO:0001736	establishment of planar polarity	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEA	AHRD
BP	GO:0006892	post-Golgi vesicle-mediated transport	None	Extended
BP	GO:0006895	Golgi to endosome transport	IEA	AHRD
BP	GO:0006897	endocytosis	IEA	AHRD
BP	GO:0006901	vesicle coating	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	None	Extended
BP	GO:0007155	cell adhesion	IEA	AHRD
BP	GO:0007163	establishment or maintenance of cell polarity	None	Extended
BP	GO:0007164	establishment of tissue polarity	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	IEA	AHRD
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009798	axis specification	None	Extended
BP	GO:0009826	unidimensional cell growth	IEA	AHRD
BP	GO:0009846	pollen germination	IEA	AHRD
BP	GO:0009880	embryonic pattern specification	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	None	Extended
BP	GO:0009942	longitudinal axis specification	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	IEA	AHRD
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010274	hydrotropism	IEA	AHRD
BP	GO:0010311	lateral root formation	IEA	AHRD
BP	GO:0010540	basipetal auxin transport	IEA	AHRD
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016050	vesicle organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030010	establishment of cell polarity	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031252	cell leading edge	IEA	AHRD
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032012	regulation of ARF protein signal transduction	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEA	AHRD
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034067	protein localization to Golgi apparatus	IEA	AHRD
MF	GO:0035091	phosphatidylinositol binding	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	AHRD
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
CC	GO:0045202	synapse	IEA	AHRD
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046578	regulation of Ras protein signal transduction	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048200	Golgi transport vesicle coating	None	Extended
BP	GO:0048205	COPI coating of Golgi vesicle	IEA	AHRD
BP	GO:0048209	regulation of vesicle targeting, to, from or within Golgi	IEA	AHRD
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048518	positive regulation of biological process	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051056	regulation of small GTPase mediated signal transduction	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0061162	establishment of monopolar cell polarity	IEA	AHRD
BP	GO:0061339	establishment or maintenance of monopolar cell polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070417	cellular response to cold	IEA	AHRD
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0070973	protein localization to endoplasmic reticulum exit site	IEA	AHRD
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	IEA	AHRD
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0071985	multivesicular body sorting pathway	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEA	AHRD
BP	GO:0080119	ER body organization	IEA	AHRD
BP	GO:0090166	Golgi disassembly	IEA	AHRD
CC	GO:0090406	pollen tube	IEA	AHRD
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0097111	endoplasmic reticulum-Golgi intermediate compartment organization	IEA	AHRD
CC	GO:0098588	bounding membrane of organelle	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
MF	GO:1901981	phosphatidylinositol phosphate binding	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
MF	GO:1902936	phosphatidylinositol bisphosphate binding	None	Extended
BP	GO:1903008	organelle disassembly	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	IEA	AHRD
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:2000008	regulation of protein localization to cell surface	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
CC	GO:0005770	late endosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0009629	response to gravity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009630	gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009637	response to blue light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009638	phototropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009860	pollen tube growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009902	chloroplast relocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009904	chloroplast accumulation movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0009909	regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009911	positive regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009932	cell tip growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009958	positive gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0010051	xylem and phloem pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010229	inflorescence development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019750	chloroplast localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045176	apical protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048367	shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048582	positive regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048831	regulation of shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051644	plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051656	establishment of organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051667	establishment of plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090567	reproductive shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000243	positive regulation of reproductive process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032691	Mon2/Sec7/BIG1-like_HUS	317	478
IPR032629	DCB_dom	68	224
IPR035999	Sec7_dom_sf	559	747
IPR000904	Sec7_dom	563	746

External Links

No external refs found!

SOLTUB.AGRIA.G00000013054

Expression Profile

Co-expression Networks

Functional Annotation