SOLTUB.AGRIA.G00000013268


Description : ATP-dependent RNA helicase, putative


Gene families : OG_02_0008801 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013268
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_534


Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEA AHRD
MF GO:0000287 magnesium ion binding IEA AHRD
CC GO:0000785 chromatin IEA AHRD
CC GO:0000805 X chromosome IEA AHRD
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA AHRD
MF GO:0001069 regulatory region RNA binding IEA AHRD
BP GO:0001503 ossification IEA AHRD
BP GO:0001731 formation of translation preinitiation complex IEA AHRD
BP GO:0002735 positive regulation of myeloid dendritic cell cytokine production IEA AHRD
MF GO:0003688 DNA replication origin binding IEA AHRD
MF GO:0003712 transcription coregulator activity IEA AHRD
MF GO:0003725 double-stranded RNA binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005700 polytene chromosome IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005813 centrosome IEA AHRD
BP GO:0007417 central nervous system development IEA AHRD
BP GO:0007549 dosage compensation IEA AHRD
BP GO:0008340 determination of adult lifespan IEA AHRD
MF GO:0008494 translation activator activity IEA AHRD
BP GO:0009615 response to virus IEA AHRD
CC GO:0010494 cytoplasmic stress granule IEA AHRD
CC GO:0015629 actin cytoskeleton IEA AHRD
CC GO:0016282 eukaryotic 43S preinitiation complex IEA AHRD
CC GO:0016604 nuclear body IEA AHRD
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEA AHRD
CC GO:0022627 cytosolic small ribosomal subunit IEA AHRD
CC GO:0030424 axon IEA AHRD
CC GO:0030425 dendrite IEA AHRD
BP GO:0031453 positive regulation of heterochromatin formation IEA AHRD
MF GO:0031490 chromatin DNA binding IEA AHRD
BP GO:0032508 DNA duplex unwinding IEA AHRD
BP GO:0032727 positive regulation of interferon-alpha production IEA AHRD
BP GO:0032728 positive regulation of interferon-beta production IEA AHRD
BP GO:0032755 positive regulation of interleukin-6 production IEA AHRD
BP GO:0032760 positive regulation of tumor necrosis factor production IEA AHRD
MF GO:0033679 3'-5' DNA/RNA helicase activity IEA AHRD
MF GO:0034458 3'-5' RNA helicase activity IEA AHRD
MF GO:0035197 siRNA binding IEA AHRD
MF GO:0035613 RNA stem-loop binding IEA AHRD
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEA AHRD
BP GO:0039695 DNA-templated viral transcription IEA AHRD
BP GO:0042255 ribosome assembly IEA AHRD
CC GO:0042788 polysomal ribosome IEA AHRD
MF GO:0042826 histone deacetylase binding IEA AHRD
MF GO:0043024 ribosomal small subunit binding IEA AHRD
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA AHRD
CC GO:0043204 perikaryon IEA AHRD
BP GO:0043488 regulation of mRNA stability IEA AHRD
BP GO:0044806 G-quadruplex DNA unwinding IEA AHRD
BP GO:0045433 male courtship behavior, veined wing generated song production IEA AHRD
BP GO:0045739 positive regulation of DNA repair IEA AHRD
BP GO:0045995 regulation of embryonic development IEA AHRD
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEA AHRD
BP GO:0048675 axon extension IEA AHRD
BP GO:0050684 regulation of mRNA processing IEA AHRD
MF GO:0051880 G-quadruplex DNA binding IEA AHRD
BP GO:0051891 positive regulation of cardioblast differentiation IEA AHRD
BP GO:0060261 positive regulation of transcription initiation by RNA polymerase II IEA AHRD
BP GO:0060760 positive regulation of response to cytokine stimulus IEA AHRD
BP GO:0061003 positive regulation of dendritic spine morphogenesis IEA AHRD
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEA AHRD
MF GO:0070063 RNA polymerase binding IEA AHRD
CC GO:0070578 RISC-loading complex IEA AHRD
MF GO:0070883 pre-miRNA binding IEA AHRD
CC GO:0070937 CRD-mediated mRNA stability complex IEA AHRD
BP GO:0071360 cellular response to exogenous dsRNA IEA AHRD
CC GO:0072487 MSL complex IEA AHRD
BP GO:0090669 telomerase RNA stabilization IEA AHRD
CC GO:0097165 nuclear stress granule IEA AHRD
MF GO:0106222 lncRNA binding IEA AHRD
BP GO:1901534 positive regulation of hematopoietic progenitor cell differentiation IEA AHRD
BP GO:1902064 obsolete regulation of transcription from RNA polymerase II promoter involved in spermatogenesis IEA AHRD
BP GO:1903313 positive regulation of mRNA metabolic process IEA AHRD
BP GO:1903608 protein localization to cytoplasmic stress granule IEA AHRD
BP GO:1903843 cellular response to arsenite ion IEA AHRD
BP GO:1904582 positive regulation of intracellular mRNA localization IEA AHRD
BP GO:1905698 positive regulation of polysome binding IEA AHRD
MF GO:1990518 single-stranded 3'-5' DNA helicase activity IEA AHRD
BP GO:2000373 positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity IEA AHRD
BP GO:2000765 regulation of cytoplasmic translation IEA AHRD
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008240 tripeptidyl-peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Predict GO terms from Neighborhoods
CC GO:0022626 cytosolic ribosome IEP Predict GO terms from Neighborhoods
MF GO:0033218 amide binding IEP Predict GO terms from Neighborhoods
MF GO:0042277 peptide binding IEP Predict GO terms from Neighborhoods
MF GO:0070008 serine-type exopeptidase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 195 346
IPR014720 dsRBD_dom 991 1053
IPR011709 DEAD-box_helicase_OB_fold 802 884
IPR007502 Helicase-assoc_dom 647 722
IPR027417 P-loop_NTPase 190 744
IPR001650 Helicase_C 451 583
No external refs found!