SOLTUB.AGRIA.G00000013499


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0014064 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013499
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
BP GO:0006397 mRNA processing IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
CC GO:0009579 thylakoid IEA AHRD
BP GO:0009658 chloroplast organization IEA AHRD
BP GO:0009790 embryo development IEA AHRD
BP GO:0048731 system development IEA AHRD
BP GO:0050794 regulation of cellular process IEA AHRD
Type GO Term Name Evidence Source
MF GO:0004311 farnesyltranstransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004337 geranyltranstransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004659 prenyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006643 membrane lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006664 glycolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006817 phosphate ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006879 cellular iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0007029 endoplasmic reticulum organization IEP Predict GO terms from Neighborhoods
BP GO:0007097 nuclear migration IEP Predict GO terms from Neighborhoods
MF GO:0008378 galactosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008494 translation activator activity IEP Predict GO terms from Neighborhoods
MF GO:0008728 GTP diphosphokinase activity IEP Predict GO terms from Neighborhoods
BP GO:0009247 glycolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009314 response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0009416 response to light stimulus IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
CC GO:0009575 chromoplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009637 response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0009668 plastid membrane organization IEP Predict GO terms from Neighborhoods
MF GO:0009673 low-affinity phosphate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0009707 chloroplast outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0009767 photosynthetic electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0009773 photosynthetic electron transport in photosystem I IEP Predict GO terms from Neighborhoods
CC GO:0009842 cyanelle IEP Predict GO terms from Neighborhoods
BP GO:0009902 chloroplast relocation IEP Predict GO terms from Neighborhoods
BP GO:0009903 chloroplast avoidance movement IEP Predict GO terms from Neighborhoods
BP GO:0009904 chloroplast accumulation movement IEP Predict GO terms from Neighborhoods
BP GO:0009913 epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010027 thylakoid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0010117 photoprotection IEP Predict GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Predict GO terms from Neighborhoods
CC GO:0010287 plastoglobule IEP Predict GO terms from Neighborhoods
BP GO:0010960 magnesium ion homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015114 phosphate ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015693 magnesium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
BP GO:0016108 tetraterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016109 tetraterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016116 carotenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016117 carotenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016119 carotene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016120 carotene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016191 synaptic vesicle uncoating IEP Predict GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
MF GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016778 diphosphotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0019374 galactolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019375 galactolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019750 chloroplast localization IEP Predict GO terms from Neighborhoods
BP GO:0030048 actin filament-based movement IEP Predict GO terms from Neighborhoods
MF GO:0030276 clathrin binding IEP Predict GO terms from Neighborhoods
MF GO:0030332 cyclin binding IEP Predict GO terms from Neighborhoods
BP GO:0030855 epithelial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0031022 nuclear migration along microfilament IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0031407 oxylipin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031408 oxylipin biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0031593 polyubiquitin modification-dependent protein binding IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
MF GO:0032050 clathrin heavy chain binding IEP Predict GO terms from Neighborhoods
BP GO:0032069 regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032074 negative regulation of nuclease activity IEP Predict GO terms from Neighborhoods
CC GO:0032421 stereocilium bundle IEP Predict GO terms from Neighborhoods
BP GO:0032544 plastid translation IEP Predict GO terms from Neighborhoods
BP GO:0033561 regulation of water loss via skin IEP Predict GO terms from Neighborhoods
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
MF GO:0035250 UDP-galactosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0035315 hair cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0035435 phosphate ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0035622 intrahepatic bile duct development IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
BP GO:0042550 photosystem I stabilization IEP Predict GO terms from Neighborhoods
BP GO:0042592 homeostatic process IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0043661 peribacteroid membrane IEP Predict GO terms from Neighborhoods
BP GO:0045806 negative regulation of endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0046467 membrane lipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046481 digalactosyldiacylglycerol synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0046905 15-cis-phytoene synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0048259 regulation of receptor-mediated endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0048261 negative regulation of receptor-mediated endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0048853 forebrain morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048871 multicellular organismal homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0048878 chemical homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0050801 ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0050878 regulation of body fluid levels IEP Predict GO terms from Neighborhoods
BP GO:0050891 multicellular organismal water homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0051179 localization IEP Predict GO terms from Neighborhoods
BP GO:0051234 establishment of localization IEP Predict GO terms from Neighborhoods
BP GO:0051261 protein depolymerization IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
BP GO:0051640 organelle localization IEP Predict GO terms from Neighborhoods
BP GO:0051644 plastid localization IEP Predict GO terms from Neighborhoods
BP GO:0051647 nucleus localization IEP Predict GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Predict GO terms from Neighborhoods
BP GO:0051656 establishment of organelle localization IEP Predict GO terms from Neighborhoods
BP GO:0051667 establishment of plastid localization IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0055065 metal ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055072 iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055076 transition metal ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055080 cation homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0060119 inner ear receptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0060700 regulation of ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060701 negative regulation of ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0061009 common bile duct development IEP Predict GO terms from Neighborhoods
BP GO:0061436 establishment of skin barrier IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071482 cellular response to light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071483 cellular response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0071484 cellular response to light intensity IEP Predict GO terms from Neighborhoods
BP GO:0072318 clathrin coat disassembly IEP Predict GO terms from Neighborhoods
BP GO:0072319 vesicle uncoating IEP Predict GO terms from Neighborhoods
BP GO:0080177 plastoglobule organization IEP Predict GO terms from Neighborhoods
BP GO:0080183 response to photooxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0098660 inorganic ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0098771 inorganic ion homeostasis IEP Predict GO terms from Neighborhoods
CC GO:0098858 actin-based cell projection IEP Predict GO terms from Neighborhoods
CC GO:0098862 cluster of actin-based cell projections IEP Predict GO terms from Neighborhoods
BP GO:0099515 actin filament-based transport IEP Predict GO terms from Neighborhoods
BP GO:1900186 negative regulation of clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:1901031 regulation of response to reactive oxygen species IEP Predict GO terms from Neighborhoods
BP GO:1901917 regulation of exoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:1901918 negative regulation of exoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:1902265 abscisic acid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:1902882 regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1903830 magnesium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1905777 regulation of exonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:1905778 negative regulation of exonuclease activity IEP Predict GO terms from Neighborhoods
CC GO:1990229 iron-sulfur cluster assembly complex IEP Predict GO terms from Neighborhoods
BP GO:1990641 response to iron ion starvation IEP Predict GO terms from Neighborhoods
BP GO:2000177 regulation of neural precursor cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000179 positive regulation of neural precursor cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000369 regulation of clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 507 539
IPR002885 Pentatricopeptide_repeat 378 433
IPR002885 Pentatricopeptide_repeat 445 505
IPR002885 Pentatricopeptide_repeat 292 314
IPR002885 Pentatricopeptide_repeat 246 274
IPR002885 Pentatricopeptide_repeat 568 593
IPR002885 Pentatricopeptide_repeat 321 346
IPR002885 Pentatricopeptide_repeat 459 493
IPR002885 Pentatricopeptide_repeat 529 553
IPR002885 Pentatricopeptide_repeat 424 454
IPR002885 Pentatricopeptide_repeat 495 527
No external refs found!