SOLTUB.AGRIA.G00000013719


Description : LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)


Gene families : OG_02_0014113 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013719
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_5


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0009299 mRNA transcription IEA AHRD
BP GO:0009637 response to blue light IEA AHRD
BP GO:0009826 unidimensional cell growth IEA AHRD
BP GO:0010114 response to red light IEA AHRD
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEA AHRD
BP GO:0010218 response to far red light IEA AHRD
BP GO:0010492 maintenance of shoot apical meristem identity IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
BP GO:0045892 negative regulation of DNA-templated transcription IEA AHRD
BP GO:0048441 petal development IEA AHRD
BP GO:0048834 specification of petal number IEA AHRD
BP GO:0080050 regulation of seed development IEA AHRD
BP GO:0090698 post-embryonic plant morphogenesis IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
MF GO:0000900 mRNA regulatory element binding translation repressor activity IEP Predict GO terms from Neighborhoods
MF GO:0000976 transcription cis-regulatory region binding IEP Predict GO terms from Neighborhoods
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
MF GO:0001067 transcription regulatory region nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0001101 response to acid chemical IEP Predict GO terms from Neighborhoods
BP GO:0001173 DNA-templated transcriptional start site selection IEP Predict GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003700 DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004650 polygalacturonase activity IEP Predict GO terms from Neighborhoods
CC GO:0005884 actin filament IEP Predict GO terms from Neighborhoods
BP GO:0006110 regulation of glycolytic process IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006875 cellular metal ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006878 cellular copper ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0007165 signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0009410 response to xenobiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009414 response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:0009415 response to water IEP Predict GO terms from Neighborhoods
CC GO:0009536 plastid IEP Predict GO terms from Neighborhoods
BP GO:0009690 cytokinin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009691 cytokinin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009719 response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009725 response to hormone IEP Predict GO terms from Neighborhoods
BP GO:0009734 auxin-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009737 response to abscisic acid IEP Predict GO terms from Neighborhoods
BP GO:0009739 response to gibberellin IEP Predict GO terms from Neighborhoods
BP GO:0009742 brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009755 hormone-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009791 post-embryonic development IEP Predict GO terms from Neighborhoods
MF GO:0009824 AMP dimethylallyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009827 plant-type cell wall modification IEP Predict GO terms from Neighborhoods
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0009856 pollination IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009900 dehiscence IEP Predict GO terms from Neighborhoods
BP GO:0009901 anther dehiscence IEP Predict GO terms from Neighborhoods
BP GO:0009965 leaf morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009968 negative regulation of signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0010072 primary shoot apical meristem specification IEP Predict GO terms from Neighborhoods
BP GO:0010077 maintenance of inflorescence meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010086 embryonic root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010219 regulation of vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010220 positive regulation of vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010271 regulation of chlorophyll catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010434 bract formation IEP Predict GO terms from Neighborhoods
BP GO:0010449 root meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010565 regulation of cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010648 negative regulation of cell communication IEP Predict GO terms from Neighborhoods
BP GO:0010817 regulation of hormone levels IEP Predict GO terms from Neighborhoods
MF GO:0015186 L-glutamine transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015800 acidic amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015813 L-glutamate transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predict GO terms from Neighborhoods
BP GO:0019432 triglyceride biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0023057 negative regulation of signaling IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031138 negative regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0032350 regulation of hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032973 amino acid export across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0033240 positive regulation of cellular amine metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0033620 Mei2 nuclear dot complex IEP Predict GO terms from Neighborhoods
CC GO:0034064 Tor2-Mei2-Ste11 complex IEP Predict GO terms from Neighborhoods
BP GO:0034264 isopentenyl adenine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034265 isopentenyl adenine biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0034639 L-amino acid efflux transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0034754 cellular hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0040008 regulation of growth IEP Predict GO terms from Neighborhoods
BP GO:0040019 positive regulation of embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0040034 regulation of development, heterochronic IEP Predict GO terms from Neighborhoods
BP GO:0042445 hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042446 hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0043401 steroid hormone mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0043470 regulation of carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0043565 sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0045764 positive regulation of cellular amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045836 positive regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046916 cellular transition metal ion homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0047434 indolepyruvate decarboxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0048262 determination of dorsal/ventral asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0048506 regulation of timing of meristematic phase transition IEP Predict GO terms from Neighborhoods
BP GO:0048509 regulation of meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Predict GO terms from Neighborhoods
BP GO:0048598 embryonic morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048826 cotyledon morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048831 regulation of shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051749 indole acetic acid carboxyl methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051938 L-glutamate import IEP Predict GO terms from Neighborhoods
MF GO:0052381 tRNA dimethylallyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0052622 ATP dimethylallyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0052623 ADP dimethylallyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0055070 copper ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055073 cadmium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055076 transition metal ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0060771 phyllotactic patterning IEP Predict GO terms from Neighborhoods
BP GO:0060772 leaf phyllotactic patterning IEP Predict GO terms from Neighborhoods
BP GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning IEP Predict GO terms from Neighborhoods
BP GO:0061687 detoxification of inorganic compound IEP Predict GO terms from Neighborhoods
BP GO:0062012 regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0062013 positive regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071585 detoxification of cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072507 divalent inorganic cation homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0072522 purine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080037 negative regulation of cytokinin-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0080117 secondary growth IEP Predict GO terms from Neighborhoods
BP GO:0080144 amino acid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0080190 lateral growth IEP Predict GO terms from Neighborhoods
BP GO:0089718 amino acid import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0090354 regulation of auxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090355 positive regulation of auxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090357 regulation of tryptophan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090358 positive regulation of tryptophan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090398 cellular senescence IEP Predict GO terms from Neighborhoods
BP GO:0090400 stress-induced premature senescence IEP Predict GO terms from Neighborhoods
BP GO:0090709 regulation of timing of plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:0098712 L-glutamate import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0098754 detoxification IEP Predict GO terms from Neighborhoods
MF GO:0103007 indole-3-acetate carboxyl methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0103075 indole-3-pyruvate monooxygenase activity IEP Predict GO terms from Neighborhoods
BP GO:0106049 regulation of cellular response to osmotic stress IEP Predict GO terms from Neighborhoods
BP GO:0110046 signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predict GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0140311 protein sequestering activity IEP Predict GO terms from Neighborhoods
MF GO:0140313 molecular sequestering activity IEP Predict GO terms from Neighborhoods
BP GO:0140538 negative regulation of conjugation with zygote IEP Predict GO terms from Neighborhoods
BP GO:1900069 regulation of cellular hyperosmotic salinity response IEP Predict GO terms from Neighborhoods
BP GO:1900070 negative regulation of cellular hyperosmotic salinity response IEP Predict GO terms from Neighborhoods
BP GO:1900458 negative regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1901403 positive regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901404 regulation of tetrapyrrole catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901406 positive regulation of tetrapyrrole catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901420 negative regulation of response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:1901959 positive regulation of cutin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901993 regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901995 positive regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902102 regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902104 positive regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1903578 regulation of ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903648 positive regulation of chlorophyll catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1904248 regulation of age-related resistance IEP Predict GO terms from Neighborhoods
BP GO:1904250 positive regulation of age-related resistance IEP Predict GO terms from Neighborhoods
BP GO:1905132 regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905134 positive regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905189 regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905191 positive regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905392 plant organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1905393 plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1905428 regulation of plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1905958 negative regulation of cellular response to alcohol IEP Predict GO terms from Neighborhoods
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000014 regulation of endosperm development IEP Predict GO terms from Neighborhoods
BP GO:2000306 positive regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006936 ALOG_dom 18 136
No external refs found!