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  5. SOLTUB.AGRIA.G00000015076

SOLTUB.AGRIA.G00000015076


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0003880 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015076
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176


Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0009791 post-embryonic development IEA AHRD
BP GO:0016071 mRNA metabolic process IEA AHRD
CC GO:0043231 intracellular membrane-bounded organelle IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:0000768 syncytium formation by plasma membrane fusion IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
BP GO:0000819 sister chromatid segregation IEP Predict GO terms from Neighborhoods
CC GO:0000930 gamma-tubulin complex IEP Predict GO terms from Neighborhoods
BP GO:0000963 mitochondrial RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0001674 female germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0002263 cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002274 myeloid leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002275 myeloid cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002281 macrophage activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002366 leukocyte activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002761 regulation of myeloid leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0002763 positive regulation of myeloid leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0002943 tRNA dihydrouridine synthesis IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003823 antigen binding IEP Predict GO terms from Neighborhoods
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005814 centriole IEP Predict GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006949 syncytium formation IEP Predict GO terms from Neighborhoods
BP GO:0006974 cellular response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007447 imaginal disc pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0007450 dorsal/ventral pattern formation, imaginal disc IEP Predict GO terms from Neighborhoods
MF GO:0008013 beta-catenin binding IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0008587 imaginal disc-derived wing margin morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0008593 regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
BP GO:0009875 pollen-pistil interaction IEP Predict GO terms from Neighborhoods
BP GO:0009953 dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010018 far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Predict GO terms from Neighborhoods
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0010321 regulation of vegetative phase change IEP Predict GO terms from Neighborhoods
BP GO:0010452 histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
BP GO:0010455 positive regulation of cell fate commitment IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010842 retina layer formation IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
MF GO:0015450 protein-transporting ATPase activity IEP Predict GO terms from Neighborhoods
MF GO:0015462 ABC-type protein transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016074 sno(s)RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016077 sno(s)RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016078 tRNA catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016464 chloroplast protein-transporting ATPase activity IEP Predict GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0016584 obsolete nucleosome positioning IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
CC GO:0016607 nuclear speck IEP Predict GO terms from Neighborhoods
BP GO:0016925 protein sumoylation IEP Predict GO terms from Neighborhoods
BP GO:0017038 protein import IEP Predict GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0018023 peptidyl-lysine trimethylation IEP Predict GO terms from Neighborhoods
BP GO:0018027 peptidyl-lysine dimethylation IEP Predict GO terms from Neighborhoods
BP GO:0019048 modulation by virus of host process IEP Predict GO terms from Neighborhoods
BP GO:0019054 modulation by virus of host cellular process IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019789 SUMO transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0030218 erythrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030263 apoptotic chromosome condensation IEP Predict GO terms from Neighborhoods
BP GO:0030282 bone mineralization IEP Predict GO terms from Neighborhoods
MF GO:0030619 U1 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030620 U2 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031126 sno(s)RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031152 aggregation involved in sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0031214 biomineral tissue development IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0032391 photoreceptor connecting cilium IEP Predict GO terms from Neighborhoods
BP GO:0032790 ribosome disassembly IEP Predict GO terms from Neighborhoods
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034661 ncRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Predict GO terms from Neighborhoods
CC GO:0035101 FACT complex IEP Predict GO terms from Neighborhoods
CC GO:0035145 exon-exon junction complex IEP Predict GO terms from Neighborhoods
BP GO:0035222 wing disc pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0035845 photoreceptor cell outer segment organization IEP Predict GO terms from Neighborhoods
CC GO:0035869 ciliary transition zone IEP Predict GO terms from Neighborhoods
CC GO:0036064 ciliary basal body IEP Predict GO terms from Neighborhoods
BP GO:0039648 modulation by virus of host protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0042116 macrophage activation IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
BP GO:0042461 photoreceptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0042462 eye photoreceptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0042660 positive regulation of cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0042753 positive regulation of circadian rhythm IEP Predict GO terms from Neighborhoods
BP GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEP Predict GO terms from Neighborhoods
MF GO:0042800 histone methyltransferase activity (H3-K4 specific) IEP Predict GO terms from Neighborhoods
BP GO:0042981 regulation of apoptotic process IEP Predict GO terms from Neighborhoods
MF GO:0043023 ribosomal large subunit binding IEP Predict GO terms from Neighborhoods
CC GO:0043073 germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0043144 sno(s)RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0043628 small regulatory ncRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0043629 ncRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0043630 ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043633 polyadenylation-dependent RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043634 polyadenylation-dependent ncRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044003 modulation by symbiont of host process IEP Predict GO terms from Neighborhoods
BP GO:0044068 modulation by symbiont of host cellular process IEP Predict GO terms from Neighborhoods
BP GO:0044182 filamentous growth of a population of unicellular organisms IEP Predict GO terms from Neighborhoods
BP GO:0044260 cellular macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044265 cellular macromolecule catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0044547 DNA topoisomerase binding IEP Predict GO terms from Neighborhoods
BP GO:0044648 histone H3-K4 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:0045138 nematode male tail tip morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0045595 regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045597 positive regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045637 regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045639 positive regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045646 regulation of erythrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045655 regulation of monocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045657 positive regulation of monocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045747 positive regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046548 retinal rod cell development IEP Predict GO terms from Neighborhoods
BP GO:0046549 retinal cone cell development IEP Predict GO terms from Neighborhoods
BP GO:0046579 positive regulation of Ras protein signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0048188 Set1C/COMPASS complex IEP Predict GO terms from Neighborhoods
BP GO:0048190 wing disc dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0048666 neuron development IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0051057 positive regulation of small GTPase mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051443 positive regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051457 maintenance of protein location in nucleus IEP Predict GO terms from Neighborhoods
BP GO:0051568 histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060290 transdifferentiation IEP Predict GO terms from Neighborhoods
BP GO:0061013 regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061014 positive regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061383 trabecula morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061430 bone trabecula morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0061574 ASAP complex IEP Predict GO terms from Neighborhoods
MF GO:0070566 adenylyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070568 guanylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0070741 response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071025 RNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071027 nuclear RNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071029 nuclear ncRNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071046 nuclear polyadenylation-dependent ncRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071047 polyadenylation-dependent mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071076 RNA 3' uridylation IEP Predict GO terms from Neighborhoods
BP GO:0071105 response to interleukin-11 IEP Predict GO terms from Neighborhoods
BP GO:0071222 cellular response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
BP GO:0071348 cellular response to interleukin-11 IEP Predict GO terms from Neighborhoods
BP GO:0071354 cellular response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071396 cellular response to lipid IEP Predict GO terms from Neighborhoods
BP GO:0071490 cellular response to far red light IEP Predict GO terms from Neighborhoods
CC GO:0071601 sphere organelle IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0072091 regulation of stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0072327 vulval cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0072331 signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0072344 rescue of stalled ribosome IEP Predict GO terms from Neighborhoods
BP GO:0072595 maintenance of protein localization in organelle IEP Predict GO terms from Neighborhoods
BP GO:0072675 osteoclast fusion IEP Predict GO terms from Neighborhoods
BP GO:0080156 mitochondrial mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0080182 histone H3-K4 trimethylation IEP Predict GO terms from Neighborhoods
BP GO:0090598 male anatomical structure morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
MF GO:0097216 guanosine tetraphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0097692 histone H3-K4 monomethylation IEP Predict GO terms from Neighborhoods
MF GO:0106413 dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0110148 biomineralization IEP Predict GO terms from Neighborhoods
BP GO:0140053 mitochondrial gene expression IEP Predict GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Predict GO terms from Neighborhoods
BP GO:0140253 cell-cell fusion IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1900034 regulation of cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:1900036 positive regulation of cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900864 mitochondrial RNA modification IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901532 regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902036 regulation of hematopoietic stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902105 regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902107 positive regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902275 regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903706 regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1903708 positive regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1905868 regulation of 3'-UTR-mediated mRNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:1905870 positive regulation of 3'-UTR-mediated mRNA stabilization IEP Predict GO terms from Neighborhoods
MF GO:1990825 sequence-specific mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000177 regulation of neural precursor cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000179 positive regulation of neural precursor cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000648 positive regulation of stem cell proliferation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 262 293
IPR002885 Pentatricopeptide_repeat 329 361
IPR002885 Pentatricopeptide_repeat 295 327
IPR002885 Pentatricopeptide_repeat 233 267
IPR002885 Pentatricopeptide_repeat 198 226
IPR002885 Pentatricopeptide_repeat 301 334
IPR002885 Pentatricopeptide_repeat 371 404
IPR002885 Pentatricopeptide_repeat 268 294
IPR002885 Pentatricopeptide_repeat 336 369
IPR002885 Pentatricopeptide_repeat 164 196
IPR002885 Pentatricopeptide_repeat 406 439
IPR002885 Pentatricopeptide_repeat 478 509
IPR002885 Pentatricopeptide_repeat 195 239
IPR002885 Pentatricopeptide_repeat 368 417
IPR002885 Pentatricopeptide_repeat 478 506
IPR002885 Pentatricopeptide_repeat 165 193
No external refs found!