SOLTUB.AGRIA.G00000015520

Description : 40S ribosomal protein S15a

Gene families : OG_02_0002506 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015520
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37

Type	GO Term	Name	Evidence	Source
BP	GO:0002181	cytoplasmic translation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	AHRD
CC	GO:0005774	vacuolar membrane	IEA	AHRD
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	IEA	AHRD
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IEA	AHRD
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
CC	GO:0042788	polysomal ribosome	IEA	AHRD
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045787	positive regulation of cell cycle	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0000228	nuclear chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000243	commitment complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000387	spliceosomal snRNP assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0001775	cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001890	placenta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002182	cytoplasmic translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002262	myeloid cell homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0002263	cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002285	lymphocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002286	T cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002309	T cell proliferation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002366	leukocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002521	leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005682	U5 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005687	U4 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005689	U12-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006915	apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006924	activation-induced cell death of T cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010229	inflorescence development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016441	post-transcriptional gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0022605	mammalian oogenesis stage	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0030098	lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030099	myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030217	T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030218	erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031100	animal organ regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031929	TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031960	response to corticosteroid	IEP	Predict GO terms from Neighborhoods
BP	GO:0032868	response to insulin	IEP	Predict GO terms from Neighborhoods
BP	GO:0032943	mononuclear cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033077	T cell differentiation in thymus	IEP	Predict GO terms from Neighborhoods
BP	GO:0033500	carbohydrate homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034101	erythrocyte homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034709	methylosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0034715	pICln-Sm protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034719	SMN-Sm protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0042098	T cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042110	T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042593	glucose homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0043186	P granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0044770	cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0045321	leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045471	response to ethanol	IEP	Predict GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0046649	lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046651	lymphocyte proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0048027	mRNA 5'-UTR binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048513	animal organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048545	response to steroid hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048872	homeostasis of number of cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0051384	response to glucocorticoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070181	small ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070227	lymphocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070231	T cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070661	leukocyte proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070990	snRNP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071361	cellular response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0071383	cellular response to steroid hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071384	cellular response to corticosteroid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071385	cellular response to glucocorticoid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071548	response to dexamethasone	IEP	Predict GO terms from Neighborhoods
BP	GO:0071549	cellular response to dexamethasone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071887	leukocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098552	side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098562	cytoplasmic side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901655	cellular response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901888	regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1901889	negative regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903131	mononuclear cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903347	negative regulation of bicellular tight junction assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:1990446	U1 snRNP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000810	regulation of bicellular tight junction assembly	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035987	Ribosomal_S8_sf	4	123
IPR000630	Ribosomal_S8	4	123

External Links

No external refs found!

SOLTUB.AGRIA.G00000015520

Expression Profile

Co-expression Networks

Functional Annotation