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  5. SOLTUB.AGRIA.G00000015730

SOLTUB.AGRIA.G00000015730


Description : Actin


Gene families : OG_02_0043508 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015730
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_60


Type GO Term Name Evidence Source
MF GO:0005200 structural constituent of cytoskeleton IEA AHRD
MF GO:0005515 protein binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005856 cytoskeleton IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0007010 cytoskeleton organization IEA AHRD
BP GO:0009416 response to light stimulus IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
BP GO:0009611 response to wounding IEA AHRD
BP GO:0009733 response to auxin IEA AHRD
BP GO:0009845 seed germination IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
BP GO:0010053 root epidermal cell differentiation IEA AHRD
BP GO:0015031 protein transport IEA AHRD
BP GO:0048589 developmental growth IEA AHRD
BP GO:0051301 cell division IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010043 response to zinc ion IEP Predict GO terms from Neighborhoods
BP GO:0010089 xylem development IEP Predict GO terms from Neighborhoods
MF GO:0016209 antioxidant activity IEP Predict GO terms from Neighborhoods
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Predict GO terms from Neighborhoods
BP GO:0036294 cellular response to decreased oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0042743 hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042744 hydrogen peroxide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Predict GO terms from Neighborhoods
BP GO:0071453 cellular response to oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0071456 cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:0072593 reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0098754 detoxification IEP Predict GO terms from Neighborhoods
BP GO:0098869 cellular oxidant detoxification IEP Predict GO terms from Neighborhoods
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1900378 positive regulation of secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901141 regulation of lignin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901428 regulation of syringal lignin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901430 positive regulation of syringal lignin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1990748 cellular detoxification IEP Predict GO terms from Neighborhoods
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR043129 ATPase_NBD 454 603
IPR043129 ATPase_NBD 160 382
IPR043129 ATPase_NBD 596 806
IPR043129 ATPase_NBD 6 148
IPR004000 Actin 6 383
IPR004000 Actin 454 807
No external refs found!