Coexpression cluster: Cluster_60 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006995 cellular response to nitrogen starvation 10.62% (12/113) 5.97 0.0 0.0
GO:0043562 cellular response to nitrogen levels 11.5% (13/113) 4.94 0.0 0.0
GO:0010167 response to nitrate 10.62% (12/113) 4.8 0.0 0.0
GO:0051536 iron-sulfur cluster binding 11.5% (13/113) 4.41 0.0 0.0
GO:0051540 metal cluster binding 11.5% (13/113) 4.41 0.0 0.0
GO:0009605 response to external stimulus 49.56% (56/113) 1.31 0.0 0.0
GO:0009267 cellular response to starvation 15.04% (17/113) 3.14 0.0 0.0
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 8.85% (10/113) 4.59 0.0 0.0
GO:0097573 glutathione oxidoreductase activity 5.31% (6/113) 6.7 0.0 0.0
GO:0071577 zinc ion transmembrane transport 5.31% (6/113) 6.26 0.0 0.0
GO:0031669 cellular response to nutrient levels 15.04% (17/113) 2.84 0.0 0.0
GO:2000762 regulation of phenylpropanoid metabolic process 10.62% (12/113) 3.66 0.0 0.0
GO:0005385 zinc ion transmembrane transporter activity 5.31% (6/113) 6.11 0.0 0.0
GO:0042594 response to starvation 15.04% (17/113) 2.81 0.0 0.0
GO:1901428 regulation of syringal lignin biosynthetic process 6.19% (7/113) 5.31 0.0 0.0
GO:1901430 positive regulation of syringal lignin biosynthetic process 6.19% (7/113) 5.31 0.0 0.0
GO:0005381 iron ion transmembrane transporter activity 6.19% (7/113) 5.33 0.0 0.0
GO:0006829 zinc ion transport 5.31% (6/113) 5.56 0.0 0.0
GO:0015035 protein-disulfide reductase activity 6.19% (7/113) 4.92 0.0 0.0
GO:0015675 nickel cation transport 4.42% (5/113) 6.36 0.0 0.0
GO:0051707 response to other organism 37.17% (42/113) 1.31 0.0 0.0
GO:0000122 negative regulation of transcription by RNA polymerase II 10.62% (12/113) 3.23 0.0 0.0
GO:0031668 cellular response to extracellular stimulus 15.04% (17/113) 2.49 0.0 0.0
GO:0015036 disulfide oxidoreductase activity 6.19% (7/113) 4.72 0.0 0.0
GO:1900378 positive regulation of secondary metabolite biosynthetic process 6.19% (7/113) 4.73 0.0 0.0
GO:0044419 biological process involved in interspecies interaction between organisms 37.17% (42/113) 1.27 0.0 1e-06
GO:0071496 cellular response to external stimulus 15.04% (17/113) 2.42 0.0 1e-06
GO:0015691 cadmium ion transport 5.31% (6/113) 5.11 0.0 1e-06
GO:0005375 copper ion transmembrane transporter activity 4.42% (5/113) 5.76 0.0 1e-06
GO:0042744 hydrogen peroxide catabolic process 6.19% (7/113) 4.46 0.0 1e-06
GO:0043207 response to external biotic stimulus 37.17% (42/113) 1.21 0.0 2e-06
GO:0046915 transition metal ion transmembrane transporter activity 6.19% (7/113) 4.33 0.0 2e-06
GO:0009607 response to biotic stimulus 37.17% (42/113) 1.19 0.0 3e-06
GO:0010035 response to inorganic substance 27.43% (31/113) 1.48 0.0 3e-06
GO:0051537 2 iron, 2 sulfur cluster binding 5.31% (6/113) 4.77 0.0 3e-06
GO:0010188 response to microbial phytotoxin 3.54% (4/113) 6.43 0.0 4e-06
GO:0031667 response to nutrient levels 15.04% (17/113) 2.23 0.0 4e-06
GO:0033554 cellular response to stress 26.55% (30/113) 1.49 0.0 4e-06
GO:0042221 response to chemical 46.9% (53/113) 0.94 0.0 5e-06
GO:0043455 regulation of secondary metabolic process 10.62% (12/113) 2.81 0.0 5e-06
GO:0006826 iron ion transport 6.19% (7/113) 4.14 0.0 5e-06
GO:0010089 xylem development 7.96% (9/113) 3.39 0.0 6e-06
GO:0042743 hydrogen peroxide metabolic process 6.19% (7/113) 4.05 0.0 7e-06
GO:0043231 intracellular membrane-bounded organelle 58.41% (66/113) 0.74 0.0 8e-06
GO:0002215 defense response to nematode 5.31% (6/113) 4.46 0.0 9e-06
GO:0007154 cell communication 15.04% (17/113) 2.13 0.0 9e-06
GO:0043227 membrane-bounded organelle 58.41% (66/113) 0.73 0.0 1.2e-05
GO:0098869 cellular oxidant detoxification 6.19% (7/113) 3.73 1e-06 2.8e-05
GO:1901141 regulation of lignin biosynthetic process 6.19% (7/113) 3.7 1e-06 3e-05
GO:0050896 response to stimulus 61.06% (69/113) 0.66 1e-06 3.1e-05
GO:0009991 response to extracellular stimulus 15.04% (17/113) 1.99 1e-06 3.1e-05
GO:1900376 regulation of secondary metabolite biosynthetic process 7.96% (9/113) 3.08 1e-06 3.1e-05
GO:0098542 defense response to other organism 27.43% (31/113) 1.3 1e-06 3.2e-05
GO:0006950 response to stress 48.67% (55/113) 0.8 2e-06 5.6e-05
GO:0010043 response to zinc ion 5.31% (6/113) 3.91 3e-06 7.2e-05
GO:0004601 peroxidase activity 6.19% (7/113) 3.48 3e-06 7.6e-05
GO:0051253 negative regulation of RNA metabolic process 14.16% (16/113) 1.95 4e-06 8.1e-05
GO:0045892 negative regulation of DNA-templated transcription 13.27% (15/113) 2.02 4e-06 9e-05
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 6.19% (7/113) 3.43 4e-06 9.1e-05
GO:0031326 regulation of cellular biosynthetic process 28.32% (32/113) 1.19 5e-06 9.2e-05
GO:1902679 negative regulation of RNA biosynthetic process 13.27% (15/113) 2.01 5e-06 9.2e-05
GO:1903507 negative regulation of nucleic acid-templated transcription 13.27% (15/113) 2.01 5e-06 9.2e-05
GO:0071456 cellular response to hypoxia 7.08% (8/113) 3.04 6e-06 0.000125
GO:0000041 transition metal ion transport 6.19% (7/113) 3.33 7e-06 0.000128
GO:0036294 cellular response to decreased oxygen levels 7.08% (8/113) 3.01 8e-06 0.000143
GO:1990748 cellular detoxification 6.19% (7/113) 3.3 8e-06 0.000146
GO:0072593 reactive oxygen species metabolic process 6.19% (7/113) 3.29 8e-06 0.000147
GO:0009889 regulation of biosynthetic process 28.32% (32/113) 1.15 9e-06 0.000159
GO:1901698 response to nitrogen compound 15.93% (18/113) 1.71 9e-06 0.000164
GO:0006952 defense response 29.2% (33/113) 1.11 1e-05 0.000175
GO:0016209 antioxidant activity 6.19% (7/113) 3.2 1.2e-05 0.000206
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 14.16% (16/113) 1.82 1.2e-05 0.000208
GO:0071453 cellular response to oxygen levels 7.08% (8/113) 2.88 1.4e-05 0.000238
GO:0051716 cellular response to stimulus 30.09% (34/113) 1.03 2.4e-05 0.00039
GO:0031327 negative regulation of cellular biosynthetic process 14.16% (16/113) 1.73 2.5e-05 0.000414
GO:0046873 metal ion transmembrane transporter activity 7.08% (8/113) 2.74 2.9e-05 0.000471
GO:0005634 nucleus 29.2% (33/113) 1.04 3e-05 0.000484
GO:0010087 phloem or xylem histogenesis 8.85% (10/113) 2.33 3.2e-05 0.000499
GO:0009890 negative regulation of biosynthetic process 14.16% (16/113) 1.69 3.4e-05 0.00053
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor 3.54% (4/113) 4.43 3.7e-05 0.000563
GO:0010558 negative regulation of macromolecule biosynthetic process 13.27% (15/113) 1.73 4.6e-05 0.000699
GO:0043229 intracellular organelle 58.41% (66/113) 0.55 5.5e-05 0.000818
GO:0006357 regulation of transcription by RNA polymerase II 12.39% (14/113) 1.78 5.8e-05 0.00085
GO:0043226 organelle 58.41% (66/113) 0.54 6.7e-05 0.00098
GO:0005794 Golgi apparatus 12.39% (14/113) 1.74 8e-05 0.001151
GO:0036293 response to decreased oxygen levels 7.96% (9/113) 2.31 9e-05 0.001283
GO:0009908 flower development 6.19% (7/113) 2.71 0.000107 0.001504
GO:0070482 response to oxygen levels 7.96% (9/113) 2.23 0.000136 0.001886
GO:0051172 negative regulation of nitrogen compound metabolic process 15.93% (18/113) 1.4 0.000151 0.002077
GO:0006355 regulation of DNA-templated transcription 20.35% (23/113) 1.18 0.000162 0.0022
GO:2001141 regulation of RNA biosynthetic process 20.35% (23/113) 1.17 0.00017 0.002263
GO:1903506 regulation of nucleic acid-templated transcription 20.35% (23/113) 1.17 0.000169 0.002269
GO:0090567 reproductive shoot system development 7.08% (8/113) 2.37 0.000175 0.002296
GO:0020037 heme binding 6.19% (7/113) 2.58 0.000186 0.00242
GO:0030246 carbohydrate binding 5.31% (6/113) 2.83 0.000214 0.00275
GO:0010286 heat acclimation 5.31% (6/113) 2.82 0.000218 0.002772
GO:0098655 cation transmembrane transport 7.08% (8/113) 2.29 0.000249 0.003138
GO:0051252 regulation of RNA metabolic process 21.24% (24/113) 1.1 0.000253 0.003163
GO:0098754 detoxification 6.19% (7/113) 2.49 0.000267 0.003302
GO:0010038 response to metal ion 12.39% (14/113) 1.56 0.000283 0.003465
GO:0001666 response to hypoxia 7.08% (8/113) 2.23 0.000328 0.003977
GO:0031324 negative regulation of cellular metabolic process 15.04% (17/113) 1.34 0.00038 0.004557
GO:0034220 ion transmembrane transport 8.85% (10/113) 1.84 0.000517 0.006135
GO:0046906 tetrapyrrole binding 6.19% (7/113) 2.32 0.000547 0.006436
GO:0098662 inorganic cation transmembrane transport 6.19% (7/113) 2.31 0.000554 0.006452
GO:0008324 cation transmembrane transporter activity 7.96% (9/113) 1.93 0.000618 0.007133
GO:0031328 positive regulation of cellular biosynthetic process 15.04% (17/113) 1.27 0.000659 0.007534
GO:0030001 metal ion transport 7.08% (8/113) 2.05 0.000748 0.00832
GO:0010556 regulation of macromolecule biosynthetic process 21.24% (24/113) 0.99 0.000743 0.008341
GO:0009888 tissue development 10.62% (12/113) 1.57 0.000743 0.008415
GO:0009891 positive regulation of biosynthetic process 15.04% (17/113) 1.24 0.0008 0.008817
GO:0019219 regulation of nucleobase-containing compound metabolic process 21.24% (24/113) 0.98 0.000854 0.009321
GO:0022890 inorganic cation transmembrane transporter activity 7.08% (8/113) 2.01 0.000871 0.00943
GO:0048367 shoot system development 7.08% (8/113) 2.0 0.000921 0.009798
GO:0031323 regulation of cellular metabolic process 28.32% (32/113) 0.8 0.000919 0.009864
GO:1901700 response to oxygen-containing compound 28.32% (32/113) 0.79 0.00094 0.009906
GO:0005575 cellular_component 75.22% (85/113) 0.3 0.001026 0.010728
GO:0009505 plant-type cell wall 7.96% (9/113) 1.8 0.001173 0.012157
GO:0015318 inorganic molecular entity transmembrane transporter activity 7.96% (9/113) 1.78 0.001306 0.01342
GO:0006812 cation transport 7.96% (9/113) 1.77 0.001336 0.013614
GO:0016491 oxidoreductase activity 15.04% (17/113) 1.17 0.001384 0.013987
GO:0048731 system development 8.85% (10/113) 1.63 0.001554 0.015574
GO:0008047 enzyme activator activity 4.42% (5/113) 2.54 0.001788 0.017774
GO:0019222 regulation of metabolic process 30.97% (35/113) 0.69 0.001906 0.0188
GO:0009620 response to fungus 13.27% (15/113) 1.22 0.001968 0.019259
GO:0048046 apoplast 7.96% (9/113) 1.69 0.002019 0.019602
GO:0005829 cytosol 24.78% (28/113) 0.8 0.002084 0.020066
GO:0015075 ion transmembrane transporter activity 8.85% (10/113) 1.56 0.002177 0.0208
GO:0009266 response to temperature stimulus 14.16% (16/113) 1.14 0.002411 0.022858
GO:0098660 inorganic ion transmembrane transport 6.19% (7/113) 1.93 0.002578 0.024249
GO:0050832 defense response to fungus 9.73% (11/113) 1.4 0.003059 0.02856
GO:0009408 response to heat 7.96% (9/113) 1.58 0.003235 0.029974
GO:0010605 negative regulation of macromolecule metabolic process 15.04% (17/113) 1.05 0.003322 0.030545
GO:0009737 response to abscisic acid 10.62% (12/113) 1.29 0.003702 0.033784
GO:0009567 double fertilization forming a zygote and endosperm 2.65% (3/113) 3.28 0.003753 0.034003
GO:0009892 negative regulation of metabolic process 15.93% (18/113) 0.98 0.004038 0.036043
GO:0110165 cellular anatomical entity 72.57% (82/113) 0.27 0.004008 0.036043
GO:0010468 regulation of gene expression 22.12% (25/113) 0.79 0.004119 0.036503
GO:0005488 binding 62.83% (71/113) 0.33 0.004194 0.036902
GO:0030234 enzyme regulator activity 7.08% (8/113) 1.64 0.004368 0.03762
GO:0005515 protein binding 50.44% (57/113) 0.41 0.004307 0.037625
GO:0005802 trans-Golgi network 6.19% (7/113) 1.79 0.00435 0.037731
GO:0009593 detection of chemical stimulus 3.54% (4/113) 2.58 0.0047 0.040197
GO:0009617 response to bacterium 13.27% (15/113) 1.08 0.004884 0.041477
GO:0008150 biological_process 73.45% (83/113) 0.26 0.005184 0.043426
GO:0055072 iron ion homeostasis 2.65% (3/113) 3.11 0.005169 0.043596
GO:0003674 molecular_function 71.68% (81/113) 0.26 0.005562 0.046277
GO:0051171 regulation of nitrogen compound metabolic process 23.89% (27/113) 0.72 0.005637 0.046584
GO:0016755 aminoacyltransferase activity 1.77% (2/113) 4.15 0.005724 0.046984
GO:0065007 biological regulation 48.67% (55/113) 0.41 0.006004 0.048956
GO:0006979 response to oxidative stress 9.73% (11/113) 1.27 0.006065 0.049124
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_85 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_104 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_111 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_132 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_135 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_137 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_142 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_148 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_160 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_182 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_186 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_201 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_205 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_211 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_213 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_223 0.016 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_442 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_12 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_26 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_40 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (113) (download table)

InterPro Domains

GO Terms

Family Terms