SOLTUB.AGRIA.G00000015865


Description : Glycine-rich RNA-binding protein


Gene families : OG_02_0011707 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015865
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_13


Type GO Term Name Evidence Source
BP GO:0000245 spliceosomal complex assembly IEA AHRD
BP GO:0000349 generation of catalytic spliceosome for first transesterification step IEA AHRD
BP GO:0000380 alternative mRNA splicing, via spliceosome IEA AHRD
MF GO:0000384 first spliceosomal transesterification activity IEA AHRD
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
MF GO:0003697 single-stranded DNA binding IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0005507 copper ion binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005618 cell wall IEA AHRD
CC GO:0005686 U2 snRNP IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005777 peroxisome IEA AHRD
CC GO:0005794 Golgi apparatus IEA AHRD
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006406 mRNA export from nucleus IEA AHRD
BP GO:0007275 multicellular organism development IEA AHRD
BP GO:0009409 response to cold IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0009737 response to abscisic acid IEA AHRD
BP GO:0010043 response to zinc ion IEA AHRD
BP GO:0010608 post-transcriptional regulation of gene expression IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0016554 cytidine to uridine editing IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
BP GO:0031124 mRNA 3'-end processing IEA AHRD
BP GO:0031325 positive regulation of cellular metabolic process IEA AHRD
BP GO:0045087 innate immune response IEA AHRD
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEA AHRD
CC GO:0070274 RES complex IEA AHRD
CC GO:0071005 U2-type precatalytic spliceosome IEA AHRD
CC GO:0071920 cleavage body IEA AHRD
BP GO:0080156 mitochondrial mRNA modification IEA AHRD
BP GO:1903311 regulation of mRNA metabolic process IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0001835 blastocyst hatching IEP Predict GO terms from Neighborhoods
BP GO:0002021 response to dietary excess IEP Predict GO terms from Neighborhoods
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Predict GO terms from Neighborhoods
CC GO:0005819 spindle IEP Predict GO terms from Neighborhoods
BP GO:0007064 mitotic sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007095 mitotic G2 DNA damage checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
MF GO:0008013 beta-catenin binding IEP Predict GO terms from Neighborhoods
MF GO:0008022 protein C-terminus binding IEP Predict GO terms from Neighborhoods
BP GO:0008587 imaginal disc-derived wing margin morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0008593 regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009786 regulation of asymmetric cell division IEP Predict GO terms from Neighborhoods
BP GO:0009894 regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009895 negative regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009954 proximal/distal pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010247 detection of phosphate ion IEP Predict GO terms from Neighborhoods
BP GO:0010311 lateral root formation IEP Predict GO terms from Neighborhoods
MF GO:0015114 phosphate ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0022416 chaeta development IEP Predict GO terms from Neighborhoods
BP GO:0031063 regulation of histone deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0031065 positive regulation of histone deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0031145 anaphase-promoting complex-dependent catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0031915 positive regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0032873 negative regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
CC GO:0033597 mitotic checkpoint complex IEP Predict GO terms from Neighborhoods
CC GO:0033644 host cell membrane IEP Predict GO terms from Neighborhoods
BP GO:0035188 hatching IEP Predict GO terms from Neighborhoods
BP GO:0035435 phosphate ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0042176 regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042177 negative regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042461 photoreceptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0043627 response to estrogen IEP Predict GO terms from Neighborhoods
BP GO:0044403 biological process involved in symbiotic interaction IEP Predict GO terms from Neighborhoods
BP GO:0044818 mitotic G2/M transition checkpoint IEP Predict GO terms from Neighborhoods
BP GO:0045444 fat cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045570 regulation of imaginal disc growth IEP Predict GO terms from Neighborhoods
BP GO:0045572 positive regulation of imaginal disc growth IEP Predict GO terms from Neighborhoods
BP GO:0045732 positive regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045747 positive regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0046329 negative regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0048441 petal development IEP Predict GO terms from Neighborhoods
BP GO:0050872 white fat cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051443 positive regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0055106 ubiquitin-protein transferase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0060612 adipose tissue development IEP Predict GO terms from Neighborhoods
BP GO:0060613 fat pad development IEP Predict GO terms from Neighborhoods
BP GO:0061448 connective tissue development IEP Predict GO terms from Neighborhoods
BP GO:0070050 neuron cellular homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0070303 negative regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070306 lens fiber cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0071684 organism emergence from protective structure IEP Predict GO terms from Neighborhoods
CC GO:0085042 periarbuscular membrane IEP Predict GO terms from Neighborhoods
BP GO:0090128 regulation of synapse maturation IEP Predict GO terms from Neighborhoods
BP GO:0090129 positive regulation of synapse maturation IEP Predict GO terms from Neighborhoods
BP GO:0090207 regulation of triglyceride metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090311 regulation of protein deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0090312 positive regulation of protein deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0090344 obsolete negative regulation of cell aging IEP Predict GO terms from Neighborhoods
MF GO:0097027 ubiquitin-protein transferase activator activity IEP Predict GO terms from Neighborhoods
MF GO:1901683 arsenate ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1901684 arsenate ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1901993 regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901995 positive regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902102 regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902104 positive regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1903538 regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1904146 positive regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1904666 regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904668 positive regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1905132 regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905134 positive regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR035979 RBD_domain_sf 18 116
IPR000504 RRM_dom 36 105
No external refs found!