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  5. SOLTUB.AGRIA.G00000001624

SOLTUB.AGRIA.G00000001624


Description : Signal recognition particle subunit SRP72


Gene families : OG_02_0001079 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001624
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_159


Type GO Term Name Evidence Source
MF GO:0005488 binding IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000266 mitochondrial fission IEP Predict GO terms from Neighborhoods
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
CC GO:0000781 chromosome, telomeric region IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
BP GO:0000919 cell plate assembly IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0001056 RNA polymerase III activity IEP Predict GO terms from Neighborhoods
BP GO:0001654 eye development IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
MF GO:0001882 nucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Predict GO terms from Neighborhoods
MF GO:0003954 NADH dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0004016 adenylate cyclase activity IEP Predict GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Predict GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Predict GO terms from Neighborhoods
MF GO:0005527 macrolide binding IEP Predict GO terms from Neighborhoods
MF GO:0005528 FK506 binding IEP Predict GO terms from Neighborhoods
CC GO:0005665 RNA polymerase II, core complex IEP Predict GO terms from Neighborhoods
CC GO:0005666 RNA polymerase III complex IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005736 RNA polymerase I complex IEP Predict GO terms from Neighborhoods
CC GO:0005739 mitochondrion IEP Predict GO terms from Neighborhoods
CC GO:0005747 mitochondrial respiratory chain complex I IEP Predict GO terms from Neighborhoods
CC GO:0005774 vacuolar membrane IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
BP GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006275 regulation of DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006353 DNA-templated transcription termination IEP Predict GO terms from Neighborhoods
BP GO:0006360 transcription by RNA polymerase I IEP Predict GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006383 transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0006386 termination of RNA polymerase III transcription IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006821 chloride transport IEP Predict GO terms from Neighborhoods
BP GO:0006884 cell volume homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006898 receptor-mediated endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0007399 nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0007423 sensory organ development IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predict GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Predict GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008156 negative regulation of DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0008361 regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009060 aerobic respiration IEP Predict GO terms from Neighborhoods
BP GO:0009304 tRNA transcription IEP Predict GO terms from Neighborhoods
CC GO:0009504 cell plate IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
BP GO:0009561 megagametogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009742 brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009889 regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0009975 cyclase activity IEP Predict GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Predict GO terms from Neighborhoods
BP GO:0010036 response to boron-containing substance IEP Predict GO terms from Neighborhoods
BP GO:0010152 pollen maturation IEP Predict GO terms from Neighborhoods
BP GO:0010187 negative regulation of seed germination IEP Predict GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010942 positive regulation of cell death IEP Predict GO terms from Neighborhoods
BP GO:0014706 striated muscle tissue development IEP Predict GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0016018 cyclosporin A binding IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016922 nuclear receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0018193 peptidyl-amino acid modification IEP Predict GO terms from Neighborhoods
BP GO:0018208 peptidyl-proline modification IEP Predict GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0019076 viral release from host cell IEP Predict GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019646 aerobic electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0019722 calcium-mediated signaling IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0022904 respiratory electron transport chain IEP Predict GO terms from Neighborhoods
CC GO:0030054 cell junction IEP Predict GO terms from Neighborhoods
CC GO:0030135 coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
MF GO:0030276 clathrin binding IEP Predict GO terms from Neighborhoods
MF GO:0030331 nuclear estrogen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0030587 sorocarp development IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
CC GO:0030964 NADH dehydrogenase complex IEP Predict GO terms from Neighborhoods
CC GO:0031248 protein acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0031261 DNA replication preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
CC GO:0031463 Cul3-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032481 positive regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032543 mitochondrial translation IEP Predict GO terms from Neighborhoods
MF GO:0032549 ribonucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0032648 regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
BP GO:0032728 positive regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
CC GO:0032838 plasma membrane bounded cell projection cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0032886 regulation of microtubule-based process IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0034389 lipid droplet organization IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034644 cellular response to UV IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035891 exit from host cell IEP Predict GO terms from Neighborhoods
BP GO:0042127 regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0042391 regulation of membrane potential IEP Predict GO terms from Neighborhoods
BP GO:0042797 tRNA transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0042981 regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043065 positive regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043067 regulation of programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0043068 positive regulation of programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Predict GO terms from Neighborhoods
MF GO:0043424 protein histidine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044000 movement in host IEP Predict GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044260 cellular macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045069 regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045070 positive regulation of viral genome replication IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0045271 respiratory chain complex I IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045333 cellular respiration IEP Predict GO terms from Neighborhoods
CC GO:0045334 clathrin-coated endocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045794 negative regulation of cell volume IEP Predict GO terms from Neighborhoods
BP GO:0045903 positive regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046686 response to cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0048480 stigma development IEP Predict GO terms from Neighborhoods
BP GO:0048518 positive regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048524 positive regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0048738 cardiac muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
BP GO:0050708 regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0050714 positive regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0050792 regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0051047 positive regulation of secretion IEP Predict GO terms from Neighborhoods
BP GO:0051053 negative regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051222 positive regulation of protein transport IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
BP GO:0051701 biological process involved in interaction with host IEP Predict GO terms from Neighborhoods
MF GO:0051879 Hsp90 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051881 regulation of mitochondrial membrane potential IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060537 muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
BP GO:0061083 regulation of protein refolding IEP Predict GO terms from Neighborhoods
BP GO:0065007 biological regulation IEP Predict GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Predict GO terms from Neighborhoods
BP GO:0070141 response to UV-A IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
CC GO:0070461 SAGA-type complex IEP Predict GO terms from Neighborhoods
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0071492 cellular response to UV-A IEP Predict GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072583 clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0080029 cellular response to boron-containing substance levels IEP Predict GO terms from Neighborhoods
BP GO:0080157 regulation of plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090329 regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0097014 ciliary plasm IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0097237 cellular response to toxic substance IEP Predict GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Predict GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0098781 ncRNA transcription IEP Predict GO terms from Neighborhoods
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0098803 respiratory chain complex IEP Predict GO terms from Neighborhoods
CC GO:0099568 cytoplasmic region IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
CC GO:1902493 acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
CC GO:1902495 transmembrane transporter complex IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903332 regulation of protein folding IEP Predict GO terms from Neighborhoods
BP GO:1903532 positive regulation of secretion by cell IEP Predict GO terms from Neighborhoods
BP GO:1903900 regulation of viral life cycle IEP Predict GO terms from Neighborhoods
BP GO:1905952 regulation of lipid localization IEP Predict GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Predict GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Predict GO terms from Neighborhoods
CC GO:1990351 transporter complex IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:2000114 regulation of establishment of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:2000694 regulation of phragmoplast microtubule organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013699 Signal_recog_part_SRP72_RNA-bd 312 367
No external refs found!