SOLTUB.AGRIA.G00000016166

Description : Ring-h2 finger protein atl11

Gene families : OG_02_0043535 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016166
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_102

GO:0045240

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007584	response to nutrient	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033273	response to vitamin	None	Extended
BP	GO:0033591	response to L-ascorbic acid	IEA	AHRD
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001578	microtubule bundle formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004180	carboxypeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005615	extracellular space	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005819	spindle	IEP	Predict GO terms from Neighborhoods
CC	GO:0005871	kinesin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005912	adherens junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0005915	zonula adherens	IEP	Predict GO terms from Neighborhoods
BP	GO:0007601	visual perception	IEP	Predict GO terms from Neighborhoods
MF	GO:0008327	methyl-CpG binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008395	steroid hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008569	minus-end-directed microtubule motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009044	xylan 1,4-beta-xylosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0009627	systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009647	skotomorphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0010012	steroid 22-alpha hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010091	trichome branching	IEP	Predict GO terms from Neighborhoods
BP	GO:0010214	seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010225	response to UV-C	IEP	Predict GO terms from Neighborhoods
BP	GO:0010274	hydrotropism	IEP	Predict GO terms from Neighborhoods
MF	GO:0010295	(+)-abscisic acid 8'-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010358	leaf shaping	IEP	Predict GO terms from Neighborhoods
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0010428	methyl-CpNpG binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0010429	methyl-CpNpN binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010438	cellular response to sulfur starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016410	N-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0020037	heme binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0031221	arabinan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031222	arabinan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031534	minus-end directed microtubule sliding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034331	cell junction maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0034332	adherens junction organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034334	adherens junction maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0035212	cell competition in a multicellular organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0042220	response to cocaine	IEP	Predict GO terms from Neighborhoods
BP	GO:0042814	monopolar cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0043954	cellular component maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0044347	cell wall polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045168	cell-cell signaling involved in cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0045216	cell-cell junction organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045217	cell-cell junction maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0045218	zonula adherens maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0045493	xylan catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048441	petal development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048629	trichome patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0048657	anther wall tapetum cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050953	sensory perception of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051012	microtubule sliding	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055046	microgametogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0070008	serine-type exopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080132	fatty acid alpha-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090136	epithelial cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
CC	GO:0090406	pollen tube	IEP	Predict GO terms from Neighborhoods
MF	GO:0097599	xylanase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0097602	cullin family protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0098609	cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0120178	steroid hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900384	regulation of flavonol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901348	positive regulation of secondary cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1903340	positive regulation of cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:2000434	regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000435	negative regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000436	positive regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000895	hemicellulose catabolic process	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

External Links

No external refs found!

SOLTUB.AGRIA.G00000016166

Expression Profile

Co-expression Networks

Functional Annotation