SOLTUB.AGRIA.G00000016217


Description : Cysteine--tRNA ligase


Gene families : OG_02_0022568 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016217
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27


Type GO Term Name Evidence Source
MF GO:0004817 cysteine-tRNA ligase activity IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006417 regulation of translation IEA AHRD
BP GO:0006423 cysteinyl-tRNA aminoacylation IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
BP GO:0010197 polar nucleus fusion IEA AHRD
BP GO:0042407 cristae formation IEA AHRD
BP GO:0043067 regulation of programmed cell death IEA AHRD
BP GO:0046686 response to cadmium ion IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP Predict GO terms from Neighborhoods
BP GO:0000086 G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0000177 cytoplasmic exosome (RNase complex) IEP Predict GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Predict GO terms from Neighborhoods
CC GO:0000427 plastid-encoded plastid RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000959 mitochondrial RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000963 mitochondrial RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000967 rRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0001910 regulation of leukocyte mediated cytotoxicity IEP Predict GO terms from Neighborhoods
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predict GO terms from Neighborhoods
BP GO:0002474 antigen processing and presentation of peptide antigen via MHC class I IEP Predict GO terms from Neighborhoods
BP GO:0002483 antigen processing and presentation of endogenous peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0003014 renal system process IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003747 translation release factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Predict GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004519 endonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004521 endoribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004540 ribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004815 aspartate-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004816 asparagine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004820 glycine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004822 isoleucine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004832 valine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0005047 signal recognition particle binding IEP Predict GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Predict GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Predict GO terms from Neighborhoods
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Predict GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Predict GO terms from Neighborhoods
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006426 glycyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006428 isoleucyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006431 methionyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006438 valyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006612 protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006613 cotranslational protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006690 icosanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006813 potassium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0007588 excretion IEP Predict GO terms from Neighborhoods
MF GO:0008079 translation termination factor activity IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008312 7S RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008354 germ cell migration IEP Predict GO terms from Neighborhoods
MF GO:0008995 ribonuclease E activity IEP Predict GO terms from Neighborhoods
MF GO:0008996 ribonuclease G activity IEP Predict GO terms from Neighborhoods
BP GO:0009271 phage shock IEP Predict GO terms from Neighborhoods
CC GO:0009295 nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
CC GO:0009508 plastid chromosome IEP Predict GO terms from Neighborhoods
CC GO:0009528 plastid inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0009534 chloroplast thylakoid IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009536 plastid IEP Predict GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Predict GO terms from Neighborhoods
BP GO:0009657 plastid organization IEP Predict GO terms from Neighborhoods
BP GO:0009658 chloroplast organization IEP Predict GO terms from Neighborhoods
BP GO:0009663 plasmodesma organization IEP Predict GO terms from Neighborhoods
BP GO:0009668 plastid membrane organization IEP Predict GO terms from Neighborhoods
CC GO:0009706 chloroplast inner membrane IEP Predict GO terms from Neighborhoods
MF GO:0009974 zeinoxanthin epsilon hydroxylase activity IEP Predict GO terms from Neighborhoods
CC GO:0010007 magnesium chelatase complex IEP Predict GO terms from Neighborhoods
BP GO:0010019 chloroplast-nucleus signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010027 thylakoid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Predict GO terms from Neighborhoods
BP GO:0010217 cellular aluminum ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0010239 chloroplast mRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0010291 carotene beta-ring hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0010305 leaf vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
MF GO:0015083 aluminum ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015440 ABC-type peptide transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015562 efflux transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015833 peptide transport IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016108 tetraterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016109 tetraterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016116 carotenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016117 carotenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016122 xanthophyll metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016123 xanthophyll biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016149 translation release factor activity, codon specific IEP Predict GO terms from Neighborhoods
MF GO:0016151 nickel cation binding IEP Predict GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016851 magnesium chelatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016987 sigma factor activity IEP Predict GO terms from Neighborhoods
BP GO:0017085 response to insecticide IEP Predict GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0017151 DEAD/H-box RNA helicase binding IEP Predict GO terms from Neighborhoods
BP GO:0018026 peptidyl-lysine monomethylation IEP Predict GO terms from Neighborhoods
BP GO:0018206 peptidyl-methionine modification IEP Predict GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0019369 arachidonic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019883 antigen processing and presentation of endogenous antigen IEP Predict GO terms from Neighborhoods
BP GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I IEP Predict GO terms from Neighborhoods
CC GO:0019897 extrinsic component of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0031154 culmination involved in sorocarp development IEP Predict GO terms from Neighborhoods
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0031288 sorocarp morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0031341 regulation of cell killing IEP Predict GO terms from Neighborhoods
BP GO:0031365 N-terminal protein amino acid modification IEP Predict GO terms from Neighborhoods
BP GO:0031425 chloroplast RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031426 polycistronic mRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
CC GO:0031976 plastid thylakoid IEP Predict GO terms from Neighborhoods
BP GO:0032543 mitochondrial translation IEP Predict GO terms from Neighborhoods
BP GO:0032544 plastid translation IEP Predict GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0032782 bile acid secretion IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034471 ncRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034514 mitochondrial unfolded protein response IEP Predict GO terms from Neighborhoods
CC GO:0034702 ion channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034703 cation channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034705 potassium channel complex IEP Predict GO terms from Neighborhoods
BP GO:0035551 protein initiator methionine removal involved in protein maturation IEP Predict GO terms from Neighborhoods
BP GO:0035627 ceramide transport IEP Predict GO terms from Neighborhoods
BP GO:0036260 RNA capping IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042180 cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0042287 MHC protein binding IEP Predict GO terms from Neighborhoods
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042371 vitamin K biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042372 phylloquinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042373 vitamin K metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042374 phylloquinone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042440 pigment metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042550 photosystem I stabilization IEP Predict GO terms from Neighborhoods
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0042644 chloroplast nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042646 plastid nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042779 tRNA 3'-trailer cleavage IEP Predict GO terms from Neighborhoods
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0042793 plastid transcription IEP Predict GO terms from Neighborhoods
CC GO:0042824 MHC class I peptide loading complex IEP Predict GO terms from Neighborhoods
BP GO:0042886 amide transport IEP Predict GO terms from Neighborhoods
MF GO:0042887 amide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
BP GO:0043157 response to cation stress IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044839 cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:0045047 protein targeting to ER IEP Predict GO terms from Neighborhoods
BP GO:0045472 response to ether IEP Predict GO terms from Neighborhoods
BP GO:0045648 positive regulation of erythrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0046148 pigment biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0046581 intercellular canaliculus IEP Predict GO terms from Neighborhoods
MF GO:0046623 sphingolipid floppase activity IEP Predict GO terms from Neighborhoods
MF GO:0046624 sphingolipid transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0046717 acid secretion IEP Predict GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Predict GO terms from Neighborhoods
MF GO:0046977 TAP binding IEP Predict GO terms from Neighborhoods
BP GO:0046984 regulation of hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046985 positive regulation of hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048002 antigen processing and presentation of peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0048481 plant ovule development IEP Predict GO terms from Neighborhoods
CC GO:0048500 signal recognition particle IEP Predict GO terms from Neighborhoods
BP GO:0048564 photosystem I assembly IEP Predict GO terms from Neighborhoods
BP GO:0048821 erythrocyte development IEP Predict GO terms from Neighborhoods
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predict GO terms from Neighborhoods
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predict GO terms from Neighborhoods
BP GO:0051095 regulation of helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0055079 aluminum ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0060359 response to ammonium ion IEP Predict GO terms from Neighborhoods
BP GO:0061515 myeloid cell development IEP Predict GO terms from Neighborhoods
CC GO:0062157 mitochondrial ATP-gated potassium channel complex IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070084 protein initiator methionine removal IEP Predict GO terms from Neighborhoods
BP GO:0070206 protein trimerization IEP Predict GO terms from Neighborhoods
BP GO:0070208 protein heterotrimerization IEP Predict GO terms from Neighborhoods
BP GO:0070633 transepithelial transport IEP Predict GO terms from Neighborhoods
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0071395 cellular response to jasmonic acid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071805 potassium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0072089 stem cell proliferation IEP Predict GO terms from Neighborhoods
MF GO:0072374 carotene epsilon hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0080156 mitochondrial mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0090150 establishment of protein localization to membrane IEP Predict GO terms from Neighborhoods
MF GO:0090554 phosphatidylcholine floppase activity IEP Predict GO terms from Neighborhoods
MF GO:0090555 phosphatidylethanolamine flippase activity IEP Predict GO terms from Neighborhoods
BP GO:0097254 renal tubular secretion IEP Predict GO terms from Neighborhoods
BP GO:0098586 cellular response to virus IEP Predict GO terms from Neighborhoods
MF GO:0099038 ceramide floppase activity IEP Predict GO terms from Neighborhoods
BP GO:0099039 sphingolipid translocation IEP Predict GO terms from Neighborhoods
BP GO:0099040 ceramide translocation IEP Predict GO terms from Neighborhoods
BP GO:0099120 socially cooperative development IEP Predict GO terms from Neighborhoods
BP GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0140053 mitochondrial gene expression IEP Predict GO terms from Neighborhoods
MF GO:0140327 flippase activity IEP Predict GO terms from Neighborhoods
MF GO:0140333 glycerophospholipid flippase activity IEP Predict GO terms from Neighborhoods
MF GO:0140359 ABC-type transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:1900865 chloroplast RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1901259 chloroplast rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:1901529 positive regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:1901557 response to fenofibrate IEP Predict GO terms from Neighborhoods
BP GO:1902280 regulation of RNA helicase activity IEP Predict GO terms from Neighborhoods
CC GO:1902495 transmembrane transporter complex IEP Predict GO terms from Neighborhoods
BP GO:1902602 aluminum ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1903793 positive regulation of anion transport IEP Predict GO terms from Neighborhoods
BP GO:1903961 positive regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:1904680 peptide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1904821 chloroplast disassembly IEP Predict GO terms from Neighborhoods
BP GO:1905267 endonucleolytic cleavage involved in tRNA processing IEP Predict GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Predict GO terms from Neighborhoods
CC GO:1990061 bacterial degradosome IEP Predict GO terms from Neighborhoods
CC GO:1990351 transporter complex IEP Predict GO terms from Neighborhoods
BP GO:1990962 xenobiotic transport across blood-brain barrier IEP Predict GO terms from Neighborhoods
BP GO:2001225 regulation of chloride transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032678 tRNA-synt_1_cat_dom 87 379
IPR015803 Cys-tRNA-ligase 71 553
IPR009080 tRNAsynth_Ia_anticodon-bd 405 553
No external refs found!