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  5. SOLTUB.AGRIA.G00000016397

SOLTUB.AGRIA.G00000016397


Description : Transcription initiation factor, putative


Gene families : OG_02_0003688 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016397
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_251


Type GO Term Name Evidence Source
CC GO:0110165 cellular anatomical entity IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0000139 Golgi membrane IEP Predict GO terms from Neighborhoods
MF GO:0000149 SNARE binding IEP Predict GO terms from Neighborhoods
CC GO:0000243 commitment complex IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000301 retrograde transport, vesicle recycling within Golgi IEP Predict GO terms from Neighborhoods
CC GO:0000307 cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000389 mRNA 3'-splice site recognition IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000578 embryonic axis specification IEP Predict GO terms from Neighborhoods
CC GO:0000938 GARP complex IEP Predict GO terms from Neighborhoods
CC GO:0001650 fibrillar center IEP Predict GO terms from Neighborhoods
BP GO:0001701 in utero embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Predict GO terms from Neighborhoods
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predict GO terms from Neighborhoods
BP GO:0002521 leukocyte differentiation IEP Predict GO terms from Neighborhoods
CC GO:0002944 cyclin K-CDK12 complex IEP Predict GO terms from Neighborhoods
CC GO:0002945 cyclin K-CDK13 complex IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004000 adenosine deaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0004016 adenylate cyclase activity IEP Predict GO terms from Neighborhoods
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006355 regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006382 adenosine to inosine editing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0006896 Golgi to vacuole transport IEP Predict GO terms from Neighborhoods
BP GO:0007249 I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0009638 phototropism IEP Predict GO terms from Neighborhoods
BP GO:0009785 blue light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009798 axis specification IEP Predict GO terms from Neighborhoods
BP GO:0009942 longitudinal axis specification IEP Predict GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Predict GO terms from Neighborhoods
BP GO:0010090 trichome morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0019208 phosphatase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019209 kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019239 deaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0019888 protein phosphatase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019905 syntaxin binding IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030098 lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030183 B cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0030234 enzyme regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0030295 protein kinase activator activity IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:0030628 pre-mRNA 3'-splice site binding IEP Predict GO terms from Neighborhoods
CC GO:0031011 Ino80 complex IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031441 negative regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0031985 Golgi cisterna IEP Predict GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0042113 B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predict GO terms from Neighborhoods
MF GO:0043539 protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0044788 modulation by host of viral process IEP Predict GO terms from Neighborhoods
BP GO:0044793 negative regulation by host of viral process IEP Predict GO terms from Neighborhoods
BP GO:0044827 modulation by host of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0044828 negative regulation by host of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0048193 Golgi vesicle transport IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0050733 RS domain binding IEP Predict GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051301 cell division IEP Predict GO terms from Neighborhoods
BP GO:0051851 modulation by host of symbiont process IEP Predict GO terms from Neighborhoods
MF GO:0052717 tRNA-specific adenosine-34 deaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
CC GO:0070691 P-TEFb complex IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071483 cellular response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071902 positive regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0089701 U2AF complex IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0097322 7SK snRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Predict GO terms from Neighborhoods
MF GO:0097472 cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0098791 Golgi apparatus subcompartment IEP Predict GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1900364 negative regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
BP GO:1901409 positive regulation of phosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
BP GO:1903131 mononuclear cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1904031 positive regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001163 regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues IEP Predict GO terms from Neighborhoods
BP GO:2001165 positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022003 RST 214 275
IPR007900 TAF4_C 622 920
No external refs found!