SOLTUB.AGRIA.G00000016464

Description : Basic helix-loop-helix transcription factor

Gene families : OG_02_0014444 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016464
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_163

Type	GO Term	Name	Evidence	Source
BP	GO:0000012	single strand break repair	IEA	AHRD
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000741	karyogamy	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA	AHRD
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004529	exodeoxyribonuclease activity	None	Extended
MF	GO:0004536	deoxyribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	AHRD
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	IEA	AHRD
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008409	5'-3' exonuclease activity	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	IEA	AHRD
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010197	polar nucleus fusion	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010500	transmitting tissue development	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	None	Extended
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
MF	GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035312	5'-3' exodeoxyribonuclease activity	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
MF	GO:0046983	protein dimerization activity	IEA	AHRD
MF	GO:0047627	adenylylsulfatase activity	IEA	AHRD
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0048438	floral whorl development	None	Extended
BP	GO:0048449	floral organ formation	None	Extended
BP	GO:0048462	carpel formation	IEA	AHRD
BP	GO:0048467	gynoecium development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEA	AHRD
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEA	AHRD
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048766	root hair initiation	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060688	regulation of morphogenesis of a branching structure	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080126	ovary septum development	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905328	plant septum development	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:1905428	regulation of plant organ formation	None	Extended
MF	GO:1990165	single-strand break-containing DNA binding	IEA	AHRD
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000012	regulation of auxin polar transport	IEA	AHRD
BP	GO:2000028	regulation of photoperiodism, flowering	None	Extended
BP	GO:2000032	regulation of secondary shoot formation	IEA	AHRD
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004601	peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005775	vacuolar lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0006470	protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008146	sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008199	ferric iron binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016036	cellular response to phosphate starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016128	phytosteroid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016131	brassinosteroid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016209	antioxidant activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031624	ubiquitin conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032260	response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044390	ubiquitin-like protein conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046620	regulation of organ growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0046621	negative regulation of organ growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0047364	desulfoglucosinolate sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048640	negative regulation of developmental growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0050189	phosphoenolpyruvate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0051865	protein autoubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0055062	phosphate ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055081	anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0080118	brassinosteroid sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098869	cellular oxidant detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:1900057	positive regulation of leaf senescence	IEP	Predict GO terms from Neighborhoods
MF	GO:1990135	flavonoid sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990748	cellular detoxification	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	150	191
IPR036638	HLH_DNA-bd_sf	147	200

External Links

No external refs found!

SOLTUB.AGRIA.G00000016464

Expression Profile

Co-expression Networks

Functional Annotation