Coexpression cluster: Cluster_163 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000041 transition metal ion transport 13.79% (8/58) 4.49 0.0 3e-06
GO:0055076 transition metal ion homeostasis 12.07% (7/58) 4.26 0.0 5.3e-05
GO:0046916 cellular transition metal ion homeostasis 10.34% (6/58) 4.63 0.0 6.7e-05
GO:0006878 cellular copper ion homeostasis 6.9% (4/58) 5.84 1e-06 0.000185
GO:0030001 metal ion transport 15.52% (9/58) 3.18 1e-06 0.000187
GO:0035434 copper ion transmembrane transport 5.17% (3/58) 6.98 2e-06 0.000266
GO:0055070 copper ion homeostasis 6.9% (4/58) 5.59 2e-06 0.000269
GO:0006875 cellular metal ion homeostasis 12.07% (7/58) 3.65 1e-06 0.0003
GO:0098754 detoxification 12.07% (7/58) 3.45 3e-06 0.000483
GO:0065008 regulation of biological quality 34.48% (20/58) 1.58 4e-06 0.000488
GO:0055065 metal ion homeostasis 13.79% (8/58) 3.08 4e-06 0.000504
GO:0098662 inorganic cation transmembrane transport 12.07% (7/58) 3.28 8e-06 0.000643
GO:0006812 cation transport 15.52% (9/58) 2.74 7e-06 0.000658
GO:0098771 inorganic ion homeostasis 15.52% (9/58) 2.76 6e-06 0.000672
GO:0055082 cellular chemical homeostasis 13.79% (8/58) 2.99 7e-06 0.000686
GO:0030003 cellular cation homeostasis 12.07% (7/58) 3.17 1.2e-05 0.000956
GO:0050801 ion homeostasis 15.52% (9/58) 2.57 1.8e-05 0.00119
GO:0060003 copper ion export 3.45% (2/58) 8.07 2.2e-05 0.00122
GO:0006825 copper ion transport 5.17% (3/58) 5.89 1.8e-05 0.001241
GO:0019430 removal of superoxide radicals 5.17% (3/58) 5.81 2.1e-05 0.001266
GO:0098655 cation transmembrane transport 12.07% (7/58) 3.06 2e-05 0.00127
GO:0006873 cellular ion homeostasis 12.07% (7/58) 3.09 1.8e-05 0.001287
GO:0055080 cation homeostasis 13.79% (8/58) 2.73 2.6e-05 0.001425
GO:0019725 cellular homeostasis 13.79% (8/58) 2.71 2.8e-05 0.001464
GO:1990748 cellular detoxification 8.62% (5/58) 3.78 3.3e-05 0.001583
GO:0050896 response to stimulus 65.52% (38/58) 0.76 3.3e-05 0.001636
GO:0098660 inorganic ion transmembrane transport 12.07% (7/58) 2.89 4.3e-05 0.00192
GO:0046885 regulation of hormone biosynthetic process 6.9% (4/58) 4.37 4.3e-05 0.001987
GO:0034755 iron ion transmembrane transport 5.17% (3/58) 5.43 4.8e-05 0.002059
GO:0010817 regulation of hormone levels 17.24% (10/58) 2.2 5.3e-05 0.002213
GO:0050737 O-hydroxycinnamoyltransferase activity 3.45% (2/58) 7.4 6e-05 0.002342
GO:0016531 copper chaperone activity 3.45% (2/58) 7.4 6e-05 0.002342
GO:0006811 ion transport 17.24% (10/58) 2.17 6.3e-05 0.00237
GO:0006801 superoxide metabolic process 5.17% (3/58) 5.25 6.9e-05 0.002521
GO:0016530 metallochaperone activity 3.45% (2/58) 6.94 0.000118 0.004194
GO:0016410 N-acyltransferase activity 6.9% (4/58) 3.92 0.000146 0.00503
GO:0015603 iron chelate transmembrane transporter activity 3.45% (2/58) 6.7 0.000167 0.005194
GO:0051980 iron-nicotianamine transmembrane transporter activity 3.45% (2/58) 6.7 0.000167 0.005194
GO:0098869 cellular oxidant detoxification 6.9% (4/58) 3.88 0.000162 0.0053
GO:0032350 regulation of hormone metabolic process 6.9% (4/58) 3.89 0.000159 0.00533
GO:0033214 siderophore-dependent iron import into cell 3.45% (2/58) 6.59 0.000195 0.005766
GO:0090229 negative regulation of red or far-red light signaling pathway 3.45% (2/58) 6.59 0.000195 0.005766
GO:0010600 regulation of auxin biosynthetic process 5.17% (3/58) 4.68 0.000226 0.006547
GO:0090227 regulation of red or far-red light signaling pathway 3.45% (2/58) 6.4 0.000256 0.007244
GO:0042592 homeostatic process 18.97% (11/58) 1.79 0.000271 0.007486
GO:0004784 superoxide dismutase activity 3.45% (2/58) 6.31 0.00029 0.007678
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 3.45% (2/58) 6.31 0.00029 0.007678
GO:0048878 chemical homeostasis 17.24% (10/58) 1.85 0.000393 0.010175
GO:0010244 response to low fluence blue light stimulus by blue low-fluence system 3.45% (2/58) 6.07 0.000404 0.01026
GO:1901566 organonitrogen compound biosynthetic process 18.97% (11/58) 1.71 0.000431 0.010726
GO:0080113 regulation of seed growth 5.17% (3/58) 4.29 0.000493 0.012037
GO:0072593 reactive oxygen species metabolic process 6.9% (4/58) 3.45 0.000505 0.012084
GO:0034220 ion transmembrane transport 12.07% (7/58) 2.28 0.00056 0.013145
GO:0110165 cellular anatomical entity 81.03% (47/58) 0.43 0.000576 0.013266
GO:0010187 negative regulation of seed germination 5.17% (3/58) 4.2 0.000598 0.013521
GO:0016209 antioxidant activity 6.9% (4/58) 3.36 0.000639 0.014193
GO:1901678 iron coordination entity transport 3.45% (2/58) 5.7 0.000687 0.014742
GO:0055073 cadmium ion homeostasis 3.45% (2/58) 5.7 0.000687 0.014742
GO:0080006 internode patterning 3.45% (2/58) 5.64 0.000742 0.015637
GO:0006857 oligopeptide transport 5.17% (3/58) 4.02 0.000866 0.017383
GO:0033212 iron import into cell 3.45% (2/58) 5.54 0.000856 0.01746
GO:0090354 regulation of auxin metabolic process 5.17% (3/58) 4.03 0.000846 0.01755
GO:0005575 cellular_component 81.03% (47/58) 0.41 0.000898 0.017728
GO:0050734 hydroxycinnamoyltransferase activity 3.45% (2/58) 5.49 0.000916 0.017814
GO:0016407 acetyltransferase activity 6.9% (4/58) 3.18 0.001016 0.019448
GO:0008374 O-acyltransferase activity 6.9% (4/58) 3.17 0.001042 0.019632
GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance 3.45% (2/58) 5.35 0.001109 0.019998
GO:0080118 brassinosteroid sulfotransferase activity 3.45% (2/58) 5.35 0.001109 0.019998
GO:1990135 flavonoid sulfotransferase activity 3.45% (2/58) 5.35 0.001109 0.019998
GO:0006826 iron ion transport 5.17% (3/58) 3.88 0.001129 0.020059
GO:0047364 desulfoglucosinolate sulfotransferase activity 3.45% (2/58) 5.31 0.001177 0.02063
GO:0071585 detoxification of cadmium ion 3.45% (2/58) 5.27 0.001248 0.021556
GO:0065007 biological regulation 56.9% (33/58) 0.63 0.001364 0.02324
GO:1990110 callus formation 5.17% (3/58) 3.74 0.001492 0.024754
GO:0035444 nickel cation transmembrane transport 1.72% (1/58) 9.4 0.001484 0.024944
GO:0008146 sulfotransferase activity 3.45% (2/58) 5.11 0.001548 0.025335
GO:0015833 peptide transport 5.17% (3/58) 3.68 0.001699 0.027444
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 6.9% (4/58) 2.93 0.00189 0.029384
GO:0055078 sodium ion homeostasis 3.45% (2/58) 4.97 0.001879 0.029589
GO:0048235 pollen sperm cell differentiation 5.17% (3/58) 3.63 0.001857 0.029609
GO:0006950 response to stress 46.55% (27/58) 0.73 0.00198 0.029673
GO:0061687 detoxification of inorganic compound 3.45% (2/58) 4.94 0.001967 0.029835
GO:0009742 brassinosteroid mediated signaling pathway 5.17% (3/58) 3.61 0.001955 0.030031
GO:0007623 circadian rhythm 8.62% (5/58) 2.43 0.002345 0.034318
GO:0035672 oligopeptide transmembrane transport 3.45% (2/58) 4.81 0.002336 0.034596
GO:0009959 negative gravitropism 3.45% (2/58) 4.75 0.002532 0.035795
GO:0051238 sequestering of metal ion 3.45% (2/58) 4.75 0.002532 0.035795
GO:0055085 transmembrane transport 13.79% (8/58) 1.74 0.002498 0.036136
GO:0042445 hormone metabolic process 8.62% (5/58) 2.38 0.002721 0.038037
GO:0005497 androgen binding 1.72% (1/58) 8.4 0.002965 0.039246
GO:0042101 T cell receptor complex 1.72% (1/58) 8.4 0.002965 0.039246
GO:1900210 positive regulation of cardiolipin metabolic process 1.72% (1/58) 8.4 0.002965 0.039246
GO:0055068 cobalt ion homeostasis 1.72% (1/58) 8.4 0.002965 0.039246
GO:0010928 regulation of auxin mediated signaling pathway 5.17% (3/58) 3.38 0.003039 0.039381
GO:0008150 biological_process 79.31% (46/58) 0.37 0.003015 0.039478
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 6.9% (4/58) 2.76 0.002912 0.040257
GO:0031539 positive regulation of anthocyanin metabolic process 3.45% (2/58) 4.59 0.003165 0.040592
GO:0009692 ethylene metabolic process 3.45% (2/58) 4.49 0.003624 0.042937
GO:0009693 ethylene biosynthetic process 3.45% (2/58) 4.49 0.003624 0.042937
GO:0043449 cellular alkene metabolic process 3.45% (2/58) 4.49 0.003624 0.042937
GO:0043450 alkene biosynthetic process 3.45% (2/58) 4.49 0.003624 0.042937
GO:0015691 cadmium ion transport 3.45% (2/58) 4.49 0.003624 0.042937
GO:0009900 dehiscence 5.17% (3/58) 3.3 0.003548 0.044135
GO:0048511 rhythmic process 8.62% (5/58) 2.29 0.003515 0.044172
GO:0048440 carpel development 3.45% (2/58) 4.51 0.003507 0.044513
GO:0003700 DNA-binding transcription factor activity 13.79% (8/58) 1.63 0.004038 0.04651
GO:0043401 steroid hormone mediated signaling pathway 5.17% (3/58) 3.24 0.004001 0.046512
GO:0009704 de-etiolation 3.45% (2/58) 4.42 0.003987 0.046796
GO:0043467 regulation of generation of precursor metabolites and energy 5.17% (3/58) 3.2 0.004321 0.049317
GO:2000241 regulation of reproductive process 13.79% (8/58) 1.61 0.004458 0.049519
GO:0010876 lipid localization 1.72% (1/58) 7.81 0.004445 0.049816
GO:0050189 phosphoenolpyruvate phosphatase activity 1.72% (1/58) 7.81 0.004445 0.049816
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_188 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_201 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_206 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_208 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_250 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_251 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_2 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_9 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_17 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_29 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_35 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_86 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_95 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_99 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_102 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_105 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_111 0.019 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_125 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_129 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_132 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_139 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_160 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_162 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (58) (download table)

InterPro Domains

GO Terms

Family Terms