SOLTUB.AGRIA.G00000016541

Description : Organellar single-stranded DNA-binding protein

Gene families : OG_02_0014473 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016541
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_268

Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEA	AHRD
BP	GO:0000018	regulation of DNA recombination	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009295	nucleoid	IEA	AHRD
CC	GO:0009536	plastid	IEA	AHRD
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEA	AHRD
BP	GO:0045910	negative regulation of DNA recombination	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
CC	GO:0048046	apoplast	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000117	regulation of transcription involved in G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods
CC	GO:0000419	RNA polymerase V complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
BP	GO:0001764	neuron migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002165	instar larval or pupal development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002168	instar larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002926	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003720	telomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006353	DNA-templated transcription termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006369	termination of RNA polymerase II transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006928	obsolete movement of cell or subcellular component	IEP	Predict GO terms from Neighborhoods
BP	GO:0007010	cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007416	synapse assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0007417	central nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007528	neuromuscular junction development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007635	chemosensory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0008306	associative learning	IEP	Predict GO terms from Neighborhoods
BP	GO:0008355	olfactory learning	IEP	Predict GO terms from Neighborhoods
MF	GO:0008607	phosphorylase kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009687	abscisic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009735	response to cytokinin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010185	regulation of cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010186	positive regulation of cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010288	response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0015692	lead ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016107	sesquiterpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016587	Isw1 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018973	trinitrotoluene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0018974	2,4,6-trinitrotoluene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019326	nitrotoluene metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030027	lamellipodium	IEP	Predict GO terms from Neighborhoods
BP	GO:0030097	hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030431	sleep	IEP	Predict GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030955	potassium ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031010	ISWI-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031110	regulation of microtubule polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031112	positive regulation of microtubule polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031113	regulation of microtubule polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031116	positive regulation of microtubule polymerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0031420	alkali metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032103	positive regulation of response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032106	positive regulation of response to extracellular stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032109	positive regulation of response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0032273	positive regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0032437	cuticular plate	IEP	Predict GO terms from Neighborhoods
CC	GO:0032578	aleurone grain membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032835	glomerulus development	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034329	cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035212	cell competition in a multicellular organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0035265	organ growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0040025	vulval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042048	olfactory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043288	apocarotenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043290	apocarotenoid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043633	polyadenylation-dependent RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046256	2,4,6-trinitrotoluene catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046260	trinitrotoluene catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046263	nitrotoluene catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046345	abscisic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046937	phytochelatin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048534	hematopoietic or lymphoid organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048569	post-embryonic animal organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048599	oocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048789	cytoskeletal matrix organization at active zone	IEP	Predict GO terms from Neighborhoods
BP	GO:0051124	synaptic assembly at neuromuscular junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051391	tRNA acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060236	regulation of mitotic spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060416	response to growth hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0060962	regulation of ribosomal protein gene transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0060963	positive regulation of ribosomal protein gene transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0061053	somite development	IEP	Predict GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070685	macropinocytic cup	IEP	Predict GO terms from Neighborhoods
BP	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071047	polyadenylation-dependent mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071284	cellular response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0072490	toluene-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072491	toluene-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0080046	quercetin 4'-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080127	fruit septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080191	secondary thickening	IEP	Predict GO terms from Neighborhoods
BP	GO:0090169	regulation of spindle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0090224	regulation of spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090708	specification of plant organ axis polarity	IEP	Predict GO terms from Neighborhoods
MF	GO:0097602	cullin family protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0106261	tRNA uridine(34) acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120256	olefinic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901259	chloroplast rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:1901673	regulation of mitotic spindle assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902667	regulation of axon guidance	IEP	Predict GO terms from Neighborhoods
BP	GO:1903832	regulation of cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903833	positive regulation of cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:1904047	S-adenosyl-L-methionine binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905328	plant septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:1990120	messenger ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1990884	RNA acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000025	regulation of leaf formation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000289	regulation of photoreceptor cell axon guidance	IEP	Predict GO terms from Neighborhoods
BP	GO:2000434	regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000436	positive regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000424	Primosome_PriB/ssb	77	172
IPR012340	NA-bd_OB-fold	76	174

External Links

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SOLTUB.AGRIA.G00000016541

Expression Profile

Co-expression Networks

Functional Annotation