SOLTUB.AGRIA.G00000016689

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0014522 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016689
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_29

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048316	seed development	IEA	AHRD
BP	GO:0048366	leaf development	IEA	AHRD
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0000822	inositol hexakisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001998	angiotensin-mediated vasoconstriction involved in regulation of systemic arterial blood pressure	IEP	Predict GO terms from Neighborhoods
BP	GO:0002033	angiotensin-mediated vasodilation involved in regulation of systemic arterial blood pressure	IEP	Predict GO terms from Neighborhoods
BP	GO:0002213	defense response to insect	IEP	Predict GO terms from Neighborhoods
BP	GO:0003018	vascular process in circulatory system	IEP	Predict GO terms from Neighborhoods
BP	GO:0003084	positive regulation of systemic arterial blood pressure	IEP	Predict GO terms from Neighborhoods
BP	GO:0003085	negative regulation of systemic arterial blood pressure	IEP	Predict GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005536	glucose binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006637	acyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006739	NADP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006740	NADPH regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0006741	NADP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008217	regulation of blood pressure	IEP	Predict GO terms from Neighborhoods
BP	GO:0009051	pentose-phosphate shunt, oxidative branch	IEP	Predict GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009611	response to wounding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009694	jasmonic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009991	response to extracellular stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0010011	auxin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010039	response to iron ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010041	response to iron(III) ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010152	pollen maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010167	response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0010345	suberin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010611	regulation of cardiac muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010614	negative regulation of cardiac muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0014741	negative regulation of muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0014743	regulation of muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0019150	D-ribulokinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019322	pentose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030308	negative regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031667	response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0032094	response to food	IEP	Predict GO terms from Neighborhoods
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034764	positive regulation of transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034767	positive regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035150	regulation of tube size	IEP	Predict GO terms from Neighborhoods
BP	GO:0035296	regulation of tube diameter	IEP	Predict GO terms from Neighborhoods
BP	GO:0035336	long-chain fatty-acyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035383	thioester metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0038198	auxin receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0040014	regulation of multicellular organism growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0042310	vasoconstriction	IEP	Predict GO terms from Neighborhoods
BP	GO:0042311	vasodilation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042562	hormone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042761	very long-chain fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043178	alcohol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043270	positive regulation of ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043502	regulation of muscle adaptation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043523	regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044057	regulation of system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045013	carbon catabolite repression of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045014	carbon catabolite repression of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0045471	response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0045776	negative regulation of blood pressure	IEP	Predict GO terms from Neighborhoods
BP	GO:0045777	positive regulation of blood pressure	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0046015	regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046620	regulation of organ growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0046621	negative regulation of organ growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0046835	carbohydrate phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0048029	monosaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048443	stamen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048480	stigma development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048640	negative regulation of developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051147	regulation of muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051148	negative regulation of muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051153	regulation of striated muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051154	negative regulation of striated muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051924	regulation of calcium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051928	positive regulation of calcium ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0052694	jasmonoyl-isoleucine-12-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055021	regulation of cardiac muscle tissue growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0055022	negative regulation of cardiac muscle tissue growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060420	regulation of heart growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0061050	regulation of cell growth involved in cardiac muscle cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061052	negative regulation of cell growth involved in cardiac muscle cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061117	negative regulation of heart growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061984	catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061985	carbon catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061986	negative regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0071249	cellular response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090257	regulation of muscle system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097746	blood vessel diameter maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:1901214	regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901568	fatty acid derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	Predict GO terms from Neighborhoods
BP	GO:1902514	regulation of calcium ion transmembrane transport via high voltage-gated calcium channel	IEP	Predict GO terms from Neighborhoods
BP	GO:1903169	regulation of calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904064	positive regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904427	positive regulation of calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904879	positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel	IEP	Predict GO terms from Neighborhoods
BP	GO:2000378	negative regulation of reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	142	171
IPR002885	Pentatricopeptide_repeat	657	682
IPR002885	Pentatricopeptide_repeat	214	234
IPR002885	Pentatricopeptide_repeat	115	139
IPR032867	DYW_dom	759	874
IPR002885	Pentatricopeptide_repeat	410	456
IPR002885	Pentatricopeptide_repeat	309	357
IPR002885	Pentatricopeptide_repeat	582	628
IPR002885	Pentatricopeptide_repeat	482	529
IPR002885	Pentatricopeptide_repeat	240	283

External Links

No external refs found!

SOLTUB.AGRIA.G00000016689

Expression Profile

Co-expression Networks

Functional Annotation