SOLTUB.AGRIA.G00000016804


Description : Pentatricopeptide repeat-containing protein, putative


Gene families : OG_02_0009070 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016804
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_244


Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
BP GO:0006397 mRNA processing IEA AHRD
CC GO:0012505 endomembrane system IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000932 P-body IEP Predict GO terms from Neighborhoods
BP GO:0001959 regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0001960 negative regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002577 regulation of antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0002683 negative regulation of immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002832 negative regulation of response to biotic stimulus IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003727 single-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003730 mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005844 polysome IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007162 negative regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0007284 spermatogonial cell division IEP Predict GO terms from Neighborhoods
BP GO:0007507 heart development IEP Predict GO terms from Neighborhoods
BP GO:0007596 blood coagulation IEP Predict GO terms from Neighborhoods
BP GO:0007599 hemostasis IEP Predict GO terms from Neighborhoods
BP GO:0007610 behavior IEP Predict GO terms from Neighborhoods
BP GO:0007611 learning or memory IEP Predict GO terms from Neighborhoods
BP GO:0007612 learning IEP Predict GO terms from Neighborhoods
BP GO:0007613 memory IEP Predict GO terms from Neighborhoods
MF GO:0008022 protein C-terminus binding IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008143 poly(A) binding IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008283 cell population proliferation IEP Predict GO terms from Neighborhoods
MF GO:0008494 translation activator activity IEP Predict GO terms from Neighborhoods
BP GO:0008593 regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009894 regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009895 negative regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009896 positive regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010029 regulation of seed germination IEP Predict GO terms from Neighborhoods
CC GO:0010494 cytoplasmic stress granule IEP Predict GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010721 negative regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0010975 regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0010977 negative regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019722 calcium-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0019932 second-messenger-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0022407 regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0022408 negative regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0030155 regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0030308 negative regulation of cell growth IEP Predict GO terms from Neighborhoods
BP GO:0030334 regulation of cell migration IEP Predict GO terms from Neighborhoods
CC GO:0030425 dendrite IEP Predict GO terms from Neighborhoods
BP GO:0030516 regulation of axon extension IEP Predict GO terms from Neighborhoods
BP GO:0030517 negative regulation of axon extension IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031124 mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0031252 cell leading edge IEP Predict GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031329 regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031330 negative regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031331 positive regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031345 negative regulation of cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0031370 eukaryotic initiation factor 4G binding IEP Predict GO terms from Neighborhoods
BP GO:0032102 negative regulation of response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0034063 stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034451 centriolar satellite IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0040008 regulation of growth IEP Predict GO terms from Neighborhoods
BP GO:0040012 regulation of locomotion IEP Predict GO terms from Neighborhoods
CC GO:0043005 neuron projection IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043488 regulation of mRNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
MF GO:0043621 protein self-association IEP Predict GO terms from Neighborhoods
BP GO:0045069 regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045070 positive regulation of viral genome replication IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045596 negative regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045746 negative regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0045824 negative regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045926 negative regulation of growth IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045948 positive regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0048167 regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048255 mRNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048524 positive regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0048598 embryonic morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048640 negative regulation of developmental growth IEP Predict GO terms from Neighborhoods
BP GO:0050767 regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050768 negative regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050770 regulation of axonogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050771 negative regulation of axonogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050777 negative regulation of immune response IEP Predict GO terms from Neighborhoods
BP GO:0050779 RNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0050792 regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0050793 regulation of developmental process IEP Predict GO terms from Neighborhoods
BP GO:0050804 modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0050817 coagulation IEP Predict GO terms from Neighborhoods
BP GO:0050877 nervous system process IEP Predict GO terms from Neighborhoods
BP GO:0050878 regulation of body fluid levels IEP Predict GO terms from Neighborhoods
BP GO:0050890 cognition IEP Predict GO terms from Neighborhoods
BP GO:0050920 regulation of chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051239 regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051960 regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0051961 negative regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060232 delamination IEP Predict GO terms from Neighborhoods
BP GO:0060284 regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0060338 regulation of type I interferon-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0060339 negative regulation of type I interferon-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0060759 regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0060761 negative regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0061013 regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061014 positive regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061157 mRNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0061387 regulation of extent of cell growth IEP Predict GO terms from Neighborhoods
MF GO:0062153 C5-methylcytidine-containing RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Predict GO terms from Neighborhoods
MF GO:0070717 poly-purine tract binding IEP Predict GO terms from Neighborhoods
BP GO:0070925 organelle assembly IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0071425 hematopoietic stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0072089 stem cell proliferation IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0098508 endothelial to hematopoietic transition IEP Predict GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Predict GO terms from Neighborhoods
BP GO:0099177 regulation of trans-synaptic signaling IEP Predict GO terms from Neighborhoods
BP GO:0120035 regulation of plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0140694 non-membrane-bounded organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1900140 regulation of seedling development IEP Predict GO terms from Neighborhoods
BP GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900271 regulation of long-term synaptic potentiation IEP Predict GO terms from Neighborhoods
BP GO:1901163 regulation of trophoblast cell migration IEP Predict GO terms from Neighborhoods
BP GO:1901532 regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902036 regulation of hematopoietic stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902373 negative regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902667 regulation of axon guidance IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903538 regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1903677 regulation of cap-independent translational initiation IEP Predict GO terms from Neighborhoods
BP GO:1903679 positive regulation of cap-independent translational initiation IEP Predict GO terms from Neighborhoods
BP GO:1903900 regulation of viral life cycle IEP Predict GO terms from Neighborhoods
BP GO:1904688 regulation of cytoplasmic translational initiation IEP Predict GO terms from Neighborhoods
BP GO:1904690 positive regulation of cytoplasmic translational initiation IEP Predict GO terms from Neighborhoods
CC GO:1990124 messenger ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:1990247 N6-methyladenosine-containing RNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000026 regulation of multicellular organismal development IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000145 regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000232 regulation of rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:2000622 regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000765 regulation of cytoplasmic translation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 407 436
IPR011990 TPR-like_helical_dom_sf 228 446
IPR002885 Pentatricopeptide_repeat 264 312
IPR002885 Pentatricopeptide_repeat 198 243
IPR002885 Pentatricopeptide_repeat 438 486
IPR002885 Pentatricopeptide_repeat 333 382
IPR002885 Pentatricopeptide_repeat 371 405
IPR002885 Pentatricopeptide_repeat 301 335
IPR002885 Pentatricopeptide_repeat 477 507
IPR002885 Pentatricopeptide_repeat 198 230
IPR002885 Pentatricopeptide_repeat 441 475
IPR002885 Pentatricopeptide_repeat 336 370
IPR002885 Pentatricopeptide_repeat 266 300
IPR002885 Pentatricopeptide_repeat 407 440
No external refs found!