Coexpression cluster: Cluster_244 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046316 gluconokinase activity 2.38% (2/84) 8.28 1.4e-05 0.009059
GO:0008175 tRNA methyltransferase activity 3.57% (3/84) 5.75 2.4e-05 0.011937
GO:0019521 D-gluconate metabolic process 2.38% (2/84) 7.28 6.8e-05 0.012302
GO:0046177 D-gluconate catabolic process 2.38% (2/84) 7.28 6.8e-05 0.012302
GO:0016043 cellular component organization 35.71% (30/84) 1.13 1.3e-05 0.01274
GO:0060255 regulation of macromolecule metabolic process 33.33% (28/84) 1.08 5.6e-05 0.013883
GO:0140640 catalytic activity, acting on a nucleic acid 11.9% (10/84) 2.2 6.4e-05 0.014199
GO:0071840 cellular component organization or biogenesis 35.71% (30/84) 1.04 4.4e-05 0.014619
GO:0030488 tRNA methylation 3.57% (3/84) 5.54 3.7e-05 0.014819
GO:0032991 protein-containing complex 28.57% (24/84) 1.21 5.5e-05 0.015744
GO:0051171 regulation of nitrogen compound metabolic process 30.95% (26/84) 1.09 0.000101 0.016654
GO:0019523 L-idonate metabolic process 2.38% (2/84) 6.86 0.000127 0.016793
GO:0046183 L-idonate catabolic process 2.38% (2/84) 6.86 0.000127 0.016793
GO:0005488 binding 70.24% (59/84) 0.49 0.000137 0.017061
GO:0035303 regulation of dephosphorylation 4.76% (4/84) 3.99 0.000122 0.0187
GO:0005575 cellular_component 79.76% (67/84) 0.39 0.00019 0.022262
GO:0140101 catalytic activity, acting on a tRNA 5.95% (5/84) 3.11 0.000295 0.023436
GO:0005515 protein binding 57.14% (48/84) 0.59 0.00026 0.023451
GO:0008150 biological_process 83.33% (70/84) 0.44 1.2e-05 0.023956
GO:0080090 regulation of primary metabolic process 30.95% (26/84) 1.0 0.000292 0.024177
GO:0031323 regulation of cellular metabolic process 32.14% (27/84) 0.98 0.000257 0.024287
GO:0008174 mRNA methyltransferase activity 2.38% (2/84) 6.4 0.000248 0.024636
GO:0019520 aldonic acid metabolic process 2.38% (2/84) 6.4 0.000248 0.024636
GO:0046176 aldonic acid catabolic process 2.38% (2/84) 6.4 0.000248 0.024636
GO:0051128 regulation of cellular component organization 16.67% (14/84) 1.52 0.000323 0.024701
GO:0019222 regulation of metabolic process 35.71% (30/84) 0.89 0.000291 0.02512
GO:0080009 mRNA methylation 2.38% (2/84) 6.16 0.000351 0.025808
GO:0008173 RNA methyltransferase activity 3.57% (3/84) 4.38 0.000415 0.027519
GO:0010921 regulation of phosphatase activity 3.57% (3/84) 4.36 0.000434 0.027817
GO:0000812 Swr1 complex 2.38% (2/84) 6.05 0.000408 0.027993
GO:0001558 regulation of cell growth 9.52% (8/84) 2.18 0.000401 0.028468
GO:0009987 cellular process 70.24% (59/84) 0.43 0.000582 0.036181
GO:0050794 regulation of cellular process 46.43% (39/84) 0.67 0.000607 0.036555
GO:0050789 regulation of biological process 51.19% (43/84) 0.61 0.000632 0.036951
GO:0051246 regulation of protein metabolic process 15.48% (13/84) 1.48 0.000705 0.040071
GO:0001510 RNA methylation 3.57% (3/84) 4.09 0.00075 0.040303
GO:1902494 catalytic complex 14.29% (12/84) 1.55 0.000741 0.04093
GO:0140098 catalytic activity, acting on RNA 8.33% (7/84) 2.22 0.000788 0.04123
GO:0007000 nucleolus organization 2.38% (2/84) 5.54 0.000845 0.043098
GO:0097346 INO80-type complex 2.38% (2/84) 4.86 0.002171 0.049035
GO:0043029 T cell homeostasis 1.19% (1/84) 8.86 0.002149 0.049106
GO:0018011 N-terminal peptidyl-alanine methylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0018012 N-terminal peptidyl-alanine trimethylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0018016 N-terminal peptidyl-proline dimethylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0035568 N-terminal peptidyl-proline methylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0035570 N-terminal peptidyl-serine methylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0035572 N-terminal peptidyl-serine dimethylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0035573 N-terminal peptidyl-serine trimethylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0016426 tRNA (adenine) methyltransferase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0031515 tRNA (m1A) methyltransferase complex 1.19% (1/84) 8.86 0.002149 0.049106
GO:0043527 tRNA methyltransferase complex 1.19% (1/84) 8.86 0.002149 0.049106
GO:0061953 mRNA (adenine-N1-)-methyltransferase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0046499 S-adenosylmethioninamine metabolic process 1.19% (1/84) 8.86 0.002149 0.049106
GO:0010836 negative regulation of protein ADP-ribosylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0021587 cerebellum morphogenesis 1.19% (1/84) 8.86 0.002149 0.049106
GO:1901968 regulation of polynucleotide 3'-phosphatase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:1901971 regulation of DNA-5-methylcytosine glycosylase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:1901972 positive regulation of DNA-5-methylcytosine glycosylase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:1904877 positive regulation of DNA ligase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0035871 protein K11-linked deubiquitination 1.19% (1/84) 8.86 0.002149 0.049106
GO:1990168 protein K33-linked deubiquitination 1.19% (1/84) 8.86 0.002149 0.049106
GO:0052735 tRNA (cytosine-3-)-methyltransferase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0106217 tRNA C3-cytosine methylation 1.19% (1/84) 8.86 0.002149 0.049106
GO:0004633 phosphopantothenoylcysteine decarboxylase activity 1.19% (1/84) 8.86 0.002149 0.049106
GO:0071513 phosphopantothenoylcysteine decarboxylase complex 1.19% (1/84) 8.86 0.002149 0.049106
GO:1990143 CoA-synthesizing protein complex 1.19% (1/84) 8.86 0.002149 0.049106
GO:0003938 IMP dehydrogenase activity 1.19% (1/84) 8.86 0.002149 0.049106
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_260 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_263 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_553 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_7 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_51 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_96 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_167 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_168 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (84) (download table)

InterPro Domains

GO Terms

Family Terms