SOLTUB.AGRIA.G00000016821

Description : tRNA pseudouridine synthase Pus10

Gene families : OG_02_0009073 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016821
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_233

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
MF	GO:0009982	pseudouridine synthase activity	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0002020	protease binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002064	epithelial cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002090	regulation of receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0002092	positive regulation of receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0002119	nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002164	larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002694	regulation of leukocyte activation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005677	chromatin silencing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005765	lysosomal membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0006898	receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006900	vesicle budding from membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006971	hypotonic response	IEP	Predict GO terms from Neighborhoods
BP	GO:0007032	endosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007041	lysosomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007286	spermatid development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007292	female gamete generation	IEP	Predict GO terms from Neighborhoods
CC	GO:0008021	synaptic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009910	negative regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010048	vernalization response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010647	positive regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010939	regulation of necrotic cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010940	positive regulation of necrotic cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010950	positive regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010952	positive regulation of peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016055	Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0016504	peptidase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019954	asexual reproduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0022602	ovulation cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0023056	positive regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030031	cell projection assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030121	AP-1 adaptor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030122	AP-2 adaptor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030141	secretory granule	IEP	Predict GO terms from Neighborhoods
MF	GO:0030276	clathrin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030587	sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031156	regulation of sorocarp development	IEP	Predict GO terms from Neighborhoods
CC	GO:0031201	SNARE complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031490	chromatin DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031503	protein-containing complex localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031519	PcG protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031623	receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033059	cellular pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033081	regulation of T cell differentiation in thymus	IEP	Predict GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035295	tube development	IEP	Predict GO terms from Neighborhoods
MF	GO:0035615	clathrin adaptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0036020	endolysosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042699	follicle-stimulating hormone signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043473	pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043631	RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0044325	transmembrane transporter binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044782	cilium organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045176	apical protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045580	regulation of T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045619	regulation of lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045807	positive regulation of endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045931	positive regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0048259	regulation of receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048260	positive regulation of receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048477	oogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048534	hematopoietic or lymphoid organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048538	thymus development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050708	regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050714	positive regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
MF	GO:0050750	low-density lipoprotein particle receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0050863	regulation of T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050865	regulation of cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051047	positive regulation of secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051222	positive regulation of protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051249	regulation of lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051345	positive regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0052548	regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060009	Sertoli cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060271	cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0060398	regulation of growth hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0060399	positive regulation of growth hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0060612	adipose tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0061133	endopeptidase activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061134	peptidase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061135	endopeptidase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061356	regulation of Wnt protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0061357	positive regulation of Wnt protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0061448	connective tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061512	protein localization to cilium	IEP	Predict GO terms from Neighborhoods
MF	GO:0070325	lipoprotein particle receptor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070382	exocytic vesicle	IEP	Predict GO terms from Neighborhoods
MF	GO:0070566	adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070628	proteasome binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070734	histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0072520	seminiferous tubule development	IEP	Predict GO terms from Neighborhoods
BP	GO:0072583	clathrin-dependent endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097494	regulation of vesicle size	IEP	Predict GO terms from Neighborhoods
BP	GO:0097499	protein localization to non-motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0097500	receptor localization to non-motile cilium	IEP	Predict GO terms from Neighborhoods
MF	GO:0097718	disordered domain specific binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0098884	postsynaptic neurotransmitter receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0099003	vesicle-mediated transport in synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0099072	regulation of postsynaptic membrane neurotransmitter receptor levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0099590	neurotransmitter receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0120031	plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0140239	postsynaptic endocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140312	cargo adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900242	regulation of synaptic vesicle endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1900244	positive regulation of synaptic vesicle endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902105	regulation of leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903076	regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903077	negative regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903421	regulation of synaptic vesicle recycling	IEP	Predict GO terms from Neighborhoods
BP	GO:1903423	positive regulation of synaptic vesicle recycling	IEP	Predict GO terms from Neighborhoods
BP	GO:1903441	protein localization to ciliary membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903532	positive regulation of secretion by cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1903706	regulation of hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1903828	negative regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904375	regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1904376	negative regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1905475	regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1905476	negative regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:1990075	periciliary membrane compartment	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020103	PsdUridine_synth_cat_dom_sf	436	508

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SOLTUB.AGRIA.G00000016821

Expression Profile

Co-expression Networks

Functional Annotation