SOLTUB.AGRIA.G00000016857

Description : WD40 repeat protein

Gene families : OG_02_0021747 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016857
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_248

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001708	cell fate specification	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004096	catalase activity	IEA	AHRD
MF	GO:0004601	peroxidase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005777	peroxisome	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009514	glyoxysome	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009649	entrainment of circadian clock	None	Extended
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	IEA	AHRD
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEA	AHRD
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	None	Extended
BP	GO:0009845	seed germination	IEA	AHRD
BP	GO:0009957	epidermal cell fate specification	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010026	trichome differentiation	IEA	AHRD
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	IEA	AHRD
CC	GO:0016020	membrane	IEA	AHRD
MF	GO:0016209	antioxidant activity	None	Extended
CC	GO:0016363	nuclear matrix	IEA	AHRD
MF	GO:0016491	oxidoreductase activity	None	Extended
CC	GO:0016604	nuclear body	IEA	AHRD
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	IEA	AHRD
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0042579	microbody	None	Extended
BP	GO:0042752	regulation of circadian rhythm	None	Extended
BP	GO:0043153	entrainment of circadian clock by photoperiod	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044237	cellular metabolic process	IEA	AHRD
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	None	Extended
BP	GO:0048573	photoperiodism, flowering	IEA	AHRD
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	IEA	AHRD
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001934	positive regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002009	morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
BP	GO:0003159	morphogenesis of an endothelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0005102	signaling receptor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0005956	protein kinase CK2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006906	vesicle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007309	oocyte axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007310	oocyte dorsal/ventral axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007610	behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0007622	rhythmic behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0007626	locomotory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0008062	eclosion rhythm	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008298	intracellular mRNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009798	axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009950	dorsal/ventral axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010562	positive regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010594	regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010596	negative regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010632	regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010633	negative regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010638	positive regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010942	positive regulation of cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0016050	vesicle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016319	mushroom body development	IEP	Predict GO terms from Neighborhoods
BP	GO:0018107	peptidyl-threonine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018210	peptidyl-threonine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019221	cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0030134	COPII-coated ER to Golgi transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030135	coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030173	integral component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0030334	regulation of cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0030336	negative regulation of cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0030424	axon	IEP	Predict GO terms from Neighborhoods
CC	GO:0030425	dendrite	IEP	Predict GO terms from Neighborhoods
BP	GO:0031099	regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031100	animal organ regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031301	integral component of organelle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031396	regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031445	regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031453	positive regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031519	PcG protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031594	neuromuscular junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0031983	vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032386	regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032925	regulation of activin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0032927	positive regulation of activin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033211	adiponectin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033574	response to testosterone	IEP	Predict GO terms from Neighborhoods
CC	GO:0034456	UTP-C complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034774	secretory granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0035239	tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0040012	regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0040013	negative regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042327	positive regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042631	cellular response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042753	positive regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043005	neuron projection	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043025	neuronal cell body	IEP	Predict GO terms from Neighborhoods
BP	GO:0043065	positive regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043068	positive regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043535	regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043537	negative regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0044297	cell body	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0045475	locomotor rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045937	positive regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046719	regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0048280	vesicle fusion with Golgi apparatus	IEP	Predict GO terms from Neighborhoods
BP	GO:0048284	organelle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0048512	circadian behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048729	tissue morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048732	gland development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050792	regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050804	modulation of chemical synaptic transmission	IEP	Predict GO terms from Neighborhoods
BP	GO:0050807	regulation of synapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051098	regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0060205	cytoplasmic vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0060393	regulation of pathway-restricted SMAD protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060562	epithelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060627	regulation of vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060810	intracellular mRNA localization involved in pattern specification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061025	membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0061154	endothelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0062197	cellular response to chemical stress	IEP	Predict GO terms from Neighborhoods
CC	GO:0070971	endoplasmic reticulum exit site	IEP	Predict GO terms from Neighborhoods
BP	GO:0071229	cellular response to acid chemical	IEP	Predict GO terms from Neighborhoods
BP	GO:0071462	cellular response to water stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071470	cellular response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0071472	cellular response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080163	regulation of protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090052	regulation of pericentric heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090053	positive regulation of pericentric heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090092	regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090100	positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090174	organelle membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0097730	non-motile cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0098685	Schaffer collateral - CA1 synapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0098978	glutamatergic synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0099170	postsynaptic modulation of chemical synaptic transmission	IEP	Predict GO terms from Neighborhoods
BP	GO:0099177	regulation of trans-synaptic signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0099522	cytosolic region	IEP	Predict GO terms from Neighborhoods
CC	GO:0099523	presynaptic cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0120261	regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0120263	positive regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901654	response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1902275	regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
CC	GO:1904813	ficolin-1-rich granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:1905269	positive regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:2000145	regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000146	negative regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2001252	positive regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020835	Catalase_sf	346	423
IPR036322	WD40_repeat_dom_sf	55	306
IPR001680	WD40_repeat	175	206
IPR001680	WD40_repeat	264	297

External Links

No external refs found!

SOLTUB.AGRIA.G00000016857

Expression Profile

Co-expression Networks

Functional Annotation