Description : Pentatricopeptide repeat-containing protein, chloroplastic
Gene families : OG_02_0014640 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017026 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_172 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0009536 | plastid | IEA | AHRD |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000122 | negative regulation of transcription by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000165 | MAPK cascade | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000166 | nucleotide binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001932 | regulation of protein phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001934 | positive regulation of protein phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002229 | defense response to oomycetes | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002239 | response to oomycetes | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004175 | endopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004709 | MAP kinase kinase kinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004713 | protein tyrosine kinase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005769 | early endosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006457 | protein folding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006810 | transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006839 | mitochondrial transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006909 | phagocytosis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006996 | organelle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007165 | signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007584 | response to nutrient | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008237 | metallopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008283 | cell population proliferation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009579 | thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009637 | response to blue light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009641 | shade avoidance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009646 | response to absence of light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009647 | skotomorphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009648 | photoperiodism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009649 | entrainment of circadian clock | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009657 | plastid organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009658 | chloroplast organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009685 | gibberellin metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009686 | gibberellin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009744 | response to sucrose | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009746 | response to hexose | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009750 | response to fructose | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009756 | carbohydrate mediated signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009812 | flavonoid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009896 | positive regulation of catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010017 | red or far-red light signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010073 | meristem maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010099 | regulation of photomorphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010100 | negative regulation of photomorphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010114 | response to red light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010119 | regulation of stomatal movement | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010182 | sugar mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010212 | response to ionizing radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010218 | response to far red light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010304 | PSII associated light-harvesting complex II catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010562 | positive regulation of phosphorus metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010720 | positive regulation of cell development | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0012505 | endomembrane system | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0012510 | trans-Golgi network transport vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016043 | cellular component organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016101 | diterpenoid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016102 | diterpenoid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016485 | protein processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018105 | peptidyl-serine phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018108 | peptidyl-tyrosine phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018209 | peptidyl-serine modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018212 | peptidyl-tyrosine modification | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030139 | endocytic vesicle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030150 | protein import into mitochondrial matrix | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030162 | regulation of proteolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030447 | filamentous growth | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030658 | transport vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030660 | Golgi-associated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030662 | coated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030665 | clathrin-coated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031098 | stress-activated protein kinase signaling cascade | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031331 | positive regulation of cellular catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031344 | regulation of cell projection organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031346 | positive regulation of cell projection organization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031464 | Cul4A-RING E3 ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031670 | cellular response to nutrient | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031942 | i-AAA complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031976 | plastid thylakoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031984 | organelle subcompartment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032434 | regulation of proteasomal ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033554 | cellular response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033674 | positive regulation of kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034214 | protein hexamerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034284 | response to monosaccharide | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034285 | response to disaccharide | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034982 | mitochondrial protein processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035694 | mitochondrial protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036289 | peptidyl-serine autophosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040034 | regulation of development, heterochronic | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042176 | regulation of protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042325 | regulation of phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042327 | positive regulation of phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042440 | pigment metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042752 | regulation of circadian rhythm | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043066 | negative regulation of apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043069 | negative regulation of programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043085 | positive regulation of catalytic activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043549 | regulation of kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044182 | filamentous growth of a population of unicellular organisms | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044238 | primary metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045013 | carbon catabolite repression of transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045041 | protein import into mitochondrial intermembrane space | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0045335 | phagocytic vesicle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045597 | positive regulation of cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045732 | positive regulation of protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045859 | regulation of protein kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045860 | positive regulation of protein kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045862 | positive regulation of proteolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045937 | positive regulation of phosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045990 | carbon catabolite regulation of transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046283 | anthocyanin-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048506 | regulation of timing of meristematic phase transition | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048509 | regulation of meristem development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048519 | negative regulation of biological process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048572 | short-day photoperiodism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048573 | photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048575 | short-day photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048580 | regulation of post-embryonic development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048585 | negative regulation of response to stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050793 | regulation of developmental process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050794 | regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050829 | defense response to Gram-negative bacterium | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051234 | establishment of localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051239 | regulation of multicellular organismal process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051259 | protein complex oligomerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051302 | regulation of cell division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051338 | regulation of transferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051347 | positive regulation of transferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051403 | stress-activated MAPK cascade | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051604 | protein maturation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060284 | regulation of cell development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061136 | regulation of proteasomal protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061984 | catabolite repression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061985 | carbon catabolite repression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065002 | intracellular protein transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070585 | protein localization to mitochondrion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071478 | cellular response to radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071482 | cellular response to light stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071489 | cellular response to red or far red light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071806 | protein transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0098798 | mitochondrial protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900150 | regulation of defense response to fungus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900424 | regulation of defense response to bacterium | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901420 | negative regulation of response to alcohol | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901800 | positive regulation of proteasomal protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903050 | regulation of proteolysis involved in protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903052 | positive regulation of proteolysis involved in protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905958 | negative regulation of cellular response to alcohol | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990542 | mitochondrial transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000026 | regulation of multicellular organismal development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000028 | regulation of photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000030 | regulation of response to red or far red light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000031 | regulation of salicylic acid mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000035 | regulation of stem cell division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000058 | regulation of ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000060 | positive regulation of ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000069 | regulation of post-embryonic root development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000280 | regulation of root development | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |