SOLTUB.AGRIA.G00000017037

Description : YABBY-like transcription factor CRABS CLAW-like protein

Gene families : OG_02_0024421 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017037
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_43

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001708	cell fate specification	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	IEA	AHRD
BP	GO:0009933	meristem structural organization	IEA	AHRD
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010022	meristem determinacy	None	Extended
BP	GO:0010093	specification of floral organ identity	None	Extended
BP	GO:0010094	specification of carpel identity	IEA	AHRD
BP	GO:0010154	fruit development	IEA	AHRD
BP	GO:0010158	abaxial cell fate specification	IEA	AHRD
BP	GO:0010254	nectary development	IEA	AHRD
BP	GO:0010450	inflorescence meristem growth	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010582	floral meristem determinacy	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0035266	meristem growth	None	Extended
BP	GO:0040007	growth	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048479	style development	IEA	AHRD
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048532	anatomical structure arrangement	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048832	specification of plant organ number	None	Extended
BP	GO:0048833	specification of floral organ number	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
BP	GO:0090706	specification of plant organ position	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902183	regulation of shoot apical meristem development	IEA	AHRD
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000024	regulation of leaf development	IEA	AHRD
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0001786	phosphatidylserine binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004540	ribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005615	extracellular space	IEP	Predict GO terms from Neighborhoods
CC	GO:0005901	caveola	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006812	cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006826	iron ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009044	xylan 1,4-beta-xylosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009559	embryo sac central cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0009674	potassium:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009808	lignin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009809	lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009812	flavonoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009813	flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009860	pollen tube growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010038	response to metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010039	response to iron ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010048	vernalization response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010249	auxin conjugate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010500	transmitting tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0015370	solute:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015603	iron chelate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016046	detection of fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0017156	calcium-ion regulated exocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018874	benzoate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0018958	phenol-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0031221	arabinan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031222	arabinan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0035197	siRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042996	regulation of Golgi to plasma membrane protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0044853	plasma membrane raft	IEP	Predict GO terms from Neighborhoods
BP	GO:0045493	xylan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046688	response to copper ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0048226	Casparian strip	IEP	Predict GO terms from Neighborhoods
BP	GO:0048481	plant ovule development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048533	sporocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048825	cotyledon development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050818	regulation of coagulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050819	negative regulation of coagulation	IEP	Predict GO terms from Neighborhoods
MF	GO:0051980	iron-nicotianamine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052318	regulation of phytoalexin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052319	regulation of phytoalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052320	positive regulation of phytoalexin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052322	positive regulation of phytoalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052625	4-aminobenzoate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052626	benzoate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052627	vanillate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052628	4-hydroxybenzoate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060147	regulation of post-transcriptional gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0060964	regulation of miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0070406	glutamine binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080050	regulation of seed development	IEP	Predict GO terms from Neighborhoods
MF	GO:0097599	xylanase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099402	plant organ development	IEP	Predict GO terms from Neighborhoods
MF	GO:0102053	(-)-jasmonoyl-isoleucine synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102057	jasmonoyl-valine synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102058	jasmonoyl-leucine synthetase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0110127	phloem unloading	IEP	Predict GO terms from Neighborhoods
BP	GO:0110128	phloem sucrose unloading	IEP	Predict GO terms from Neighborhoods
BP	GO:1900037	regulation of cellular response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:1900368	regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1900370	positive regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1901182	regulation of camalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901183	positive regulation of camalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902039	negative regulation of seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904159	megasporocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990058	fruit replum development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000033	regulation of seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000034	regulation of seed maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000895	hemicellulose catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006780	YABBY	6	145
IPR036910	HMG_box_dom_sf	89	143

External Links

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SOLTUB.AGRIA.G00000017037

Expression Profile

Co-expression Networks

Functional Annotation