SOLTUB.AGRIA.G00000017375

Description : Poly(A) polymerase

Gene families : OG_02_0014734 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017375
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_235

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0000287	magnesium ion binding	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002683	negative regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002832	negative regulation of response to biotic stimulus	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEA	AHRD
CC	GO:0005849	mRNA cleavage factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	AHRD
BP	GO:0006378	mRNA polyadenylation	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007129	homologous chromosome pairing at meiosis	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008285	negative regulation of cell population proliferation	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0016074	sno(s)RNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
MF	GO:0030145	manganese ion binding	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
BP	GO:0031126	sno(s)RNA 3'-end processing	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	None	Extended
BP	GO:0031440	regulation of mRNA 3'-end processing	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033620	Mei2 nuclear dot complex	IEA	AHRD
BP	GO:0033621	nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042273	ribosomal large subunit biogenesis	IEA	AHRD
BP	GO:0042710	biofilm formation	None	Extended
BP	GO:0043144	sno(s)RNA processing	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043628	small regulatory ncRNA 3'-end processing	None	Extended
BP	GO:0043629	ncRNA polyadenylation	None	Extended
BP	GO:0043631	RNA polyadenylation	None	Extended
BP	GO:0044010	single-species biofilm formation	None	Extended
BP	GO:0044011	single-species biofilm formation on inanimate substrate	IEA	AHRD
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045824	negative regulation of innate immune response	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048366	leaf development	IEA	AHRD
BP	GO:0048449	floral organ formation	None	Extended
BP	GO:0048451	petal formation	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050777	negative regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
MF	GO:0070566	adenylyltransferase activity	None	Extended
BP	GO:0071050	sno(s)RNA polyadenylation	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090605	submerged biofilm formation	None	Extended
BP	GO:0090609	single-species submerged biofilm formation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098630	aggregation of unicellular organisms	None	Extended
BP	GO:0098743	cell aggregation	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
CC	GO:1990251	nuclear exosome focus	IEA	AHRD
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000151	ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000280	nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0006111	regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007127	meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0008283	cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009314	response to radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009416	response to light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009737	response to abscisic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0010906	regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0031060	regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031466	Cul5-RING ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031624	ubiquitin conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034059	response to anoxia	IEP	Predict GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0035861	site of double-strand break	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0044390	ubiquitin-like protein conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0048285	organelle fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0048825	cotyledon development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050826	response to freezing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070417	cellular response to cold	IEP	Predict GO terms from Neighborhoods
BP	GO:0070482	response to oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0070534	protein K63-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0070887	cellular response to chemical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0070936	protein K48-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0071425	hematopoietic stem cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071453	cellular response to oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0071454	cellular response to anoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0071456	cellular response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0071497	cellular response to freezing	IEP	Predict GO terms from Neighborhoods
BP	GO:0072089	stem cell proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0140013	meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990110	callus formation	IEP	Predict GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011068	NuclTrfase_I-like_C	351	477
IPR043519	NT_sf	5	197
IPR002934	Polymerase_NTP_transf_dom	71	153
IPR007010	PolA_pol_RNA-bd_dom	410	480
IPR007010	PolA_pol_RNA-bd_dom	353	411
IPR007012	PolA_pol_cen_dom	7	350

External Links

No external refs found!

SOLTUB.AGRIA.G00000017375

Expression Profile

Co-expression Networks

Functional Annotation