Coexpression cluster: Cluster_235 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1903959 regulation of anion transmembrane transport 9.68% (6/62) 4.46 0.0 7.7e-05
GO:1905156 negative regulation of photosynthesis 6.45% (4/62) 6.13 0.0 9.4e-05
GO:0010205 photoinhibition 6.45% (4/62) 6.17 0.0 0.000112
GO:0043155 negative regulation of photosynthesis, light reaction 6.45% (4/62) 6.17 0.0 0.000112
GO:0044070 regulation of anion transport 9.68% (6/62) 4.15 1e-06 0.00015
GO:1903792 negative regulation of anion transport 6.45% (4/62) 5.72 1e-06 0.000153
GO:1903960 negative regulation of anion transmembrane transport 6.45% (4/62) 5.72 1e-06 0.000153
GO:0010360 negative regulation of anion channel activity 6.45% (4/62) 5.81 1e-06 0.000157
GO:0043467 regulation of generation of precursor metabolites and energy 9.68% (6/62) 4.1 1e-06 0.000162
GO:0010359 regulation of anion channel activity 9.68% (6/62) 4.53 0.0 0.000292
GO:0048838 release of seed from dormancy 4.84% (3/62) 6.64 4e-06 0.000322
GO:0097438 exit from dormancy 4.84% (3/62) 6.64 4e-06 0.000322
GO:1902039 negative regulation of seed dormancy process 4.84% (3/62) 6.64 4e-06 0.000322
GO:0042548 regulation of photosynthesis, light reaction 6.45% (4/62) 5.19 5e-06 0.00038
GO:0006469 negative regulation of protein kinase activity 6.45% (4/62) 5.09 6e-06 0.000469
GO:0033106 cis-Golgi network membrane 4.84% (3/62) 6.24 9e-06 0.000617
GO:0033673 negative regulation of kinase activity 6.45% (4/62) 4.93 1e-05 0.000654
GO:0032410 negative regulation of transporter activity 6.45% (4/62) 4.86 1.2e-05 0.000705
GO:0032413 negative regulation of ion transmembrane transporter activity 6.45% (4/62) 4.86 1.2e-05 0.000705
GO:0022898 regulation of transmembrane transporter activity 9.68% (6/62) 3.53 1.4e-05 0.000761
GO:0032412 regulation of ion transmembrane transporter activity 9.68% (6/62) 3.54 1.3e-05 0.000772
GO:0032409 regulation of transporter activity 9.68% (6/62) 3.5 1.5e-05 0.000805
GO:0034766 negative regulation of ion transmembrane transport 6.45% (4/62) 4.63 2.2e-05 0.001093
GO:0034763 negative regulation of transmembrane transport 6.45% (4/62) 4.57 2.5e-05 0.001169
GO:0043271 negative regulation of ion transport 6.45% (4/62) 4.57 2.5e-05 0.001169
GO:0010109 regulation of photosynthesis 6.45% (4/62) 4.37 4.4e-05 0.001951
GO:0034765 regulation of ion transmembrane transport 9.68% (6/62) 3.2 5e-05 0.002147
GO:0010030 positive regulation of seed germination 6.45% (4/62) 4.26 6e-05 0.002378
GO:0015740 C4-dicarboxylate transport 4.84% (3/62) 5.3 6.2e-05 0.002411
GO:0006536 glutamate metabolic process 4.84% (3/62) 5.33 5.9e-05 0.002425
GO:0033217 regulation of transcription from RNA polymerase II promoter in response to iron ion starvation 3.23% (2/62) 7.3 6.9e-05 0.002493
GO:0051348 negative regulation of transferase activity 6.45% (4/62) 4.2 6.9e-05 0.00257
GO:0015131 oxaloacetate transmembrane transporter activity 3.23% (2/62) 7.13 8.8e-05 0.002846
GO:0019676 ammonia assimilation cycle 3.23% (2/62) 7.13 8.8e-05 0.002846
GO:0034762 regulation of transmembrane transport 9.68% (6/62) 3.05 8.6e-05 0.00294
GO:0001933 negative regulation of protein phosphorylation 6.45% (4/62) 4.12 8.6e-05 0.003009
GO:1902456 regulation of stomatal opening 6.45% (4/62) 4.07 9.8e-05 0.003059
GO:0009414 response to water deprivation 17.74% (11/62) 1.96 0.000102 0.003107
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 8.06% (5/62) 3.34 0.00014 0.003952
GO:1901420 negative regulation of response to alcohol 8.06% (5/62) 3.34 0.00014 0.003952
GO:1905958 negative regulation of cellular response to alcohol 8.06% (5/62) 3.34 0.00014 0.003952
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 4.84% (3/62) 4.89 0.000148 0.003979
GO:0009415 response to water 17.74% (11/62) 1.9 0.000146 0.004021
GO:0042326 negative regulation of phosphorylation 6.45% (4/62) 3.9 0.000155 0.004072
GO:0106260 DNA-DNA tethering activity 3.23% (2/62) 6.6 0.000191 0.004606
GO:0140585 promoter-enhancer loop anchoring activity 3.23% (2/62) 6.6 0.000191 0.004606
GO:0140587 chromatin loop anchoring activity 3.23% (2/62) 6.6 0.000191 0.004606
GO:0007608 sensory perception of smell 3.23% (2/62) 6.6 0.000191 0.004606
GO:0110037 regulation of nematode male tail tip morphogenesis 3.23% (2/62) 6.49 0.000223 0.005153
GO:0110039 positive regulation of nematode male tail tip morphogenesis 3.23% (2/62) 6.49 0.000223 0.005153
GO:0001101 response to acid chemical 17.74% (11/62) 1.82 0.000242 0.005484
GO:2000033 regulation of seed dormancy process 4.84% (3/62) 4.55 0.000297 0.006611
GO:0043269 regulation of ion transport 9.68% (6/62) 2.69 0.000334 0.007297
GO:0019740 nitrogen utilization 3.23% (2/62) 6.13 0.000373 0.00799
GO:0009644 response to high light intensity 6.45% (4/62) 3.56 0.00038 0.008001
GO:1905039 carboxylic acid transmembrane transport 6.45% (4/62) 3.51 0.000436 0.008714
GO:0010563 negative regulation of phosphorus metabolic process 6.45% (4/62) 3.51 0.000429 0.008717
GO:0045936 negative regulation of phosphate metabolic process 6.45% (4/62) 3.51 0.000429 0.008717
GO:0006470 protein dephosphorylation 6.45% (4/62) 3.48 0.000467 0.009008
GO:0046898 response to cycloheximide 3.23% (2/62) 5.98 0.000462 0.009063
GO:1903825 organic acid transmembrane transport 6.45% (4/62) 3.44 0.000515 0.009777
GO:0010106 cellular response to iron ion starvation 3.23% (2/62) 5.84 0.00056 0.010298
GO:0007606 sensory perception of chemical stimulus 3.23% (2/62) 5.84 0.00056 0.010298
GO:2000034 regulation of seed maturation 4.84% (3/62) 4.17 0.000635 0.011486
GO:0051051 negative regulation of transport 6.45% (4/62) 3.31 0.000723 0.012875
GO:0000436 carbon catabolite activation of transcription from RNA polymerase II promoter 3.23% (2/62) 5.6 0.000785 0.013368
GO:0045991 carbon catabolite activation of transcription 3.23% (2/62) 5.6 0.000785 0.013368
GO:0055073 cadmium ion homeostasis 3.23% (2/62) 5.6 0.000785 0.013368
GO:0043169 cation binding 25.81% (16/62) 1.22 0.000913 0.014887
GO:0006835 dicarboxylic acid transport 4.84% (3/62) 4.0 0.000891 0.014949
GO:0001217 DNA-binding transcription repressor activity 3.23% (2/62) 5.49 0.000911 0.015073
GO:0010162 seed dormancy process 4.84% (3/62) 3.95 0.000981 0.015775
GO:0045859 regulation of protein kinase activity 6.45% (4/62) 3.13 0.001151 0.018255
GO:0005313 L-glutamate transmembrane transporter activity 3.23% (2/62) 5.3 0.001191 0.018633
GO:0015556 C4-dicarboxylate transmembrane transporter activity 3.23% (2/62) 5.26 0.001266 0.019294
GO:0000429 carbon catabolite regulation of transcription from RNA polymerase II promoter 3.23% (2/62) 5.26 0.001266 0.019294
GO:0009064 glutamine family amino acid metabolic process 4.84% (3/62) 3.82 0.001285 0.019327
GO:0010233 phloem transport 4.84% (3/62) 3.77 0.001428 0.020925
GO:0051607 defense response to virus 6.45% (4/62) 3.03 0.001472 0.021048
GO:0140546 defense response to symbiont 6.45% (4/62) 3.03 0.001472 0.021048
GO:0071585 detoxification of cadmium ion 3.23% (2/62) 5.17 0.001424 0.021141
GO:0015172 acidic amino acid transmembrane transporter activity 3.23% (2/62) 5.09 0.001591 0.021671
GO:0022611 dormancy process 4.84% (3/62) 3.71 0.001611 0.021693
GO:0006541 glutamine metabolic process 3.23% (2/62) 5.05 0.001677 0.021824
GO:0016602 CCAAT-binding factor complex 3.23% (2/62) 5.05 0.001677 0.021824
GO:1903715 regulation of aerobic respiration 3.23% (2/62) 5.05 0.001677 0.021824
GO:0061669 spontaneous neurotransmitter secretion 1.61% (1/62) 9.3 0.001586 0.021866
GO:0009374 biotin binding 1.61% (1/62) 9.3 0.001586 0.021866
GO:0043549 regulation of kinase activity 6.45% (4/62) 3.01 0.00158 0.02231
GO:0009931 calcium-dependent protein serine/threonine kinase activity 3.23% (2/62) 4.98 0.001857 0.023897
GO:0005634 nucleus 29.03% (18/62) 1.03 0.001968 0.024776
GO:0080050 regulation of seed development 4.84% (3/62) 3.61 0.001949 0.024796
GO:0005342 organic acid transmembrane transporter activity 6.45% (4/62) 2.89 0.002109 0.025713
GO:0046943 carboxylic acid transmembrane transporter activity 6.45% (4/62) 2.89 0.002109 0.025713
GO:0055078 sodium ion homeostasis 3.23% (2/62) 4.87 0.002144 0.025857
GO:0046872 metal ion binding 24.19% (15/62) 1.16 0.00208 0.025899
GO:0061687 detoxification of inorganic compound 3.23% (2/62) 4.84 0.002243 0.026508
GO:0009637 response to blue light 6.45% (4/62) 2.87 0.002224 0.026548
GO:0005310 dicarboxylic acid transmembrane transporter activity 3.23% (2/62) 4.81 0.002345 0.027433
GO:0048364 root development 11.29% (7/62) 1.92 0.002434 0.028182
GO:0006878 cellular copper ion homeostasis 3.23% (2/62) 4.75 0.002556 0.029302
GO:0051049 regulation of transport 12.9% (8/62) 1.73 0.002645 0.030027
GO:0045990 carbon catabolite regulation of transcription 3.23% (2/62) 4.66 0.002887 0.032461
GO:0004349 glutamate 5-kinase activity 1.61% (1/62) 8.3 0.00317 0.03337
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity 1.61% (1/62) 8.3 0.00317 0.03337
GO:0017084 delta1-pyrroline-5-carboxylate synthetase activity 1.61% (1/62) 8.3 0.00317 0.03337
GO:0050313 sulfur dioxygenase activity 1.61% (1/62) 8.3 0.00317 0.03337
GO:0004075 biotin carboxylase activity 1.61% (1/62) 8.3 0.00317 0.03337
GO:0050692 DNA binding domain binding 1.61% (1/62) 8.3 0.00317 0.03337
GO:0010857 calcium-dependent protein kinase activity 3.23% (2/62) 4.57 0.003238 0.033479
GO:0008514 organic anion transmembrane transporter activity 6.45% (4/62) 2.72 0.003236 0.033757
GO:1901654 response to ketone 4.84% (3/62) 3.38 0.003069 0.034175
GO:0031400 negative regulation of protein modification process 6.45% (4/62) 2.7 0.00342 0.035048
GO:0010232 vascular transport 4.84% (3/62) 3.3 0.003566 0.035912
GO:0055070 copper ion homeostasis 3.23% (2/62) 4.49 0.003608 0.036014
GO:0016311 dephosphorylation 6.45% (4/62) 2.68 0.003547 0.036028
GO:0015813 L-glutamate transmembrane transport 3.23% (2/62) 4.47 0.003735 0.036967
GO:0051938 L-glutamate import 3.23% (2/62) 4.44 0.003864 0.037606
GO:0043457 regulation of cellular respiration 3.23% (2/62) 4.44 0.003864 0.037606
GO:0015800 acidic amino acid transport 3.23% (2/62) 4.39 0.00413 0.039197
GO:0010262 somatic embryogenesis 3.23% (2/62) 4.39 0.00413 0.039197
GO:0010119 regulation of stomatal movement 8.06% (5/62) 2.25 0.004063 0.039211
GO:0009937 regulation of gibberellic acid mediated signaling pathway 4.84% (3/62) 3.21 0.004282 0.039993
GO:0031670 cellular response to nutrient 3.23% (2/62) 4.37 0.004265 0.040156
GO:0055046 microgametogenesis 3.23% (2/62) 4.35 0.004403 0.040789
GO:0003018 vascular process in circulatory system 4.84% (3/62) 3.18 0.004459 0.040982
GO:1901419 regulation of response to alcohol 8.06% (5/62) 2.19 0.004775 0.041573
GO:1905957 regulation of cellular response to alcohol 8.06% (5/62) 2.19 0.004775 0.041573
GO:0043648 dicarboxylic acid metabolic process 4.84% (3/62) 3.14 0.004889 0.041934
GO:0004046 aminoacylase activity 1.61% (1/62) 7.72 0.004751 0.041998
GO:0006592 ornithine biosynthetic process 1.61% (1/62) 7.72 0.004751 0.041998
GO:0034695 response to prostaglandin E 1.61% (1/62) 7.72 0.004751 0.041998
GO:0071380 cellular response to prostaglandin E stimulus 1.61% (1/62) 7.72 0.004751 0.041998
GO:0005515 protein binding 54.84% (34/62) 0.53 0.004865 0.042042
GO:0009787 regulation of abscisic acid-activated signaling pathway 8.06% (5/62) 2.2 0.004717 0.043011
GO:0004683 calmodulin-dependent protein kinase activity 3.23% (2/62) 4.23 0.005122 0.043612
GO:0003008 system process 8.06% (5/62) 2.16 0.005223 0.044152
GO:0043167 ion binding 32.26% (20/62) 0.83 0.005305 0.044513
GO:0098656 anion transmembrane transport 6.45% (4/62) 2.49 0.00567 0.047235
GO:0009416 response to light stimulus 17.74% (11/62) 1.25 0.005726 0.047358
GO:0030943 mitochondrion targeting sequence binding 1.61% (1/62) 7.3 0.00633 0.048866
GO:0071050 sno(s)RNA polyadenylation 1.61% (1/62) 7.3 0.00633 0.048866
GO:1990251 nuclear exosome focus 1.61% (1/62) 7.3 0.00633 0.048866
GO:0000052 citrulline metabolic process 1.61% (1/62) 7.3 0.00633 0.048866
GO:0019240 citrulline biosynthetic process 1.61% (1/62) 7.3 0.00633 0.048866
GO:0016743 carboxyl- or carbamoyltransferase activity 1.61% (1/62) 7.3 0.00633 0.048866
GO:0071379 cellular response to prostaglandin stimulus 1.61% (1/62) 7.3 0.00633 0.048866
GO:0015825 L-serine transport 1.61% (1/62) 7.3 0.00633 0.048866
GO:0032329 serine transport 1.61% (1/62) 7.3 0.00633 0.048866
GO:0009785 blue light signaling pathway 3.23% (2/62) 4.07 0.006376 0.0489
GO:0015849 organic acid transport 6.45% (4/62) 2.43 0.0065 0.049521
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_246 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_93 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_113 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_141 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_215 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (62) (download table)

InterPro Domains

GO Terms

Family Terms