| BP | GO:0000028 | ribosomal small subunit assembly | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000324 | fungal-type vacuole | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000427 | plastid-encoded plastid RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000470 | maturation of LSU-rRNA | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000488 | maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000489 | maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000963 | mitochondrial RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001824 | blastocyst development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002949 | tRNA threonylcarbamoyladenosine modification | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003727 | single-stranded RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003729 | mRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004177 | aminopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004820 | glycine-tRNA ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005384 | manganese ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005506 | iron ion binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005739 | mitochondrion | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005971 | ribonucleoside-diphosphate reductase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006225 | UDP biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006241 | CTP biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006351 | DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006364 | rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006417 | regulation of translation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006555 | methionine metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006828 | manganese ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006996 | organelle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007006 | mitochondrial membrane organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007007 | inner mitochondrial membrane organization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008199 | ferric iron binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008235 | metalloexopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0009041 | uridylate kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009133 | nucleoside diphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009138 | pyrimidine nucleoside diphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009139 | pyrimidine nucleoside diphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009147 | pyrimidine nucleoside triphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009148 | pyrimidine nucleoside triphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009188 | ribonucleoside diphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009193 | pyrimidine ribonucleoside diphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009194 | pyrimidine ribonucleoside diphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009208 | pyrimidine ribonucleoside triphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009209 | pyrimidine ribonucleoside triphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009218 | pyrimidine ribonucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009263 | deoxyribonucleotide biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009295 | nucleoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009451 | RNA modification | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009501 | amyloplast | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009507 | chloroplast | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009508 | plastid chromosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009532 | plastid stroma | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009535 | chloroplast thylakoid membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009536 | plastid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009570 | chloroplast stroma | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009579 | thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009657 | plastid organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009658 | chloroplast organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009790 | embryo development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009793 | embryo development ending in seed dormancy | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010207 | photosystem II assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010239 | chloroplast mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010270 | photosystem II oxygen evolving complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010343 | singlet oxygen-mediated programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010467 | gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010608 | post-transcriptional regulation of gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010950 | positive regulation of endopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016043 | cellular component organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016151 | nickel cation binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016553 | base conversion or substitution editing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016554 | cytidine to uridine editing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016556 | mRNA modification | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016874 | ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018026 | peptidyl-lysine monomethylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018206 | peptidyl-methionine modification | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019843 | rRNA binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0019866 | organelle inner membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022607 | cellular component assembly | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030371 | translation repressor activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030880 | RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031288 | sorocarp morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031425 | chloroplast RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031426 | polycistronic mRNA processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031976 | plastid thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032468 | Golgi calcium ion homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032472 | Golgi calcium ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032544 | plastid translation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033862 | UMP kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034063 | stress granule assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034357 | photosynthetic membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035551 | protein initiator methionine removal involved in protein maturation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035751 | regulation of lysosomal lumen pH | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0035770 | ribonucleoprotein granule | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036473 | cell death in response to oxidative stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042407 | cristae formation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042644 | chloroplast nucleoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042646 | plastid nucleoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042651 | thylakoid membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042750 | hibernation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042793 | plastid transcription | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043024 | ribosomal small subunit binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043038 | amino acid activation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043167 | ion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043226 | organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043229 | intracellular organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043412 | macromolecule modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043487 | regulation of RNA stability | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043488 | regulation of mRNA stability | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044210 | 'de novo' CTP biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044237 | cellular metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044238 | primary metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044528 | regulation of mitochondrial mRNA stability | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045727 | positive regulation of translation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046036 | CTP metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046048 | UDP metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046914 | transition metal ion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046940 | nucleoside monophosphate phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048564 | photosystem I assembly | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051290 | protein heterotetramerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051291 | protein heterooligomerization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0055035 | plastid thylakoid membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061013 | regulation of mRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061711 | N(6)-L-threonylcarbamoyladenine synthase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070006 | metalloaminopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070084 | protein initiator methionine removal | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070181 | small ribosomal subunit rRNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071421 | manganese ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080156 | mitochondrial mRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090615 | mitochondrial mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097468 | programmed cell death in response to reactive oxygen species | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140053 | mitochondrial gene expression | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900864 | mitochondrial RNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900865 | chloroplast RNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900871 | chloroplast mRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901259 | chloroplast rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904821 | chloroplast disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2001056 | positive regulation of cysteine-type endopeptidase activity | IEP | Predict GO terms from Neighborhoods |