Coexpression cluster: Cluster_150 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042646 plastid nucleoid 9.21% (7/76) 5.55 0.0 0.0
GO:0042644 chloroplast nucleoid 9.21% (7/76) 5.68 0.0 0.0
GO:0009532 plastid stroma 19.74% (15/76) 3.05 0.0 0.0
GO:0009570 chloroplast stroma 18.42% (14/76) 3.0 0.0 1e-06
GO:0009295 nucleoid 9.21% (7/76) 4.94 0.0 1e-06
GO:0090304 nucleic acid metabolic process 31.58% (24/76) 1.94 0.0 1e-06
GO:0009657 plastid organization 14.47% (11/76) 3.32 0.0 1e-06
GO:0016070 RNA metabolic process 26.32% (20/76) 2.14 0.0 2e-06
GO:0010027 thylakoid membrane organization 7.89% (6/76) 5.27 0.0 2e-06
GO:0006139 nucleobase-containing compound metabolic process 34.21% (26/76) 1.76 0.0 2e-06
GO:0009668 plastid membrane organization 7.89% (6/76) 5.05 0.0 3e-06
GO:0043170 macromolecule metabolic process 51.32% (39/76) 1.2 0.0 3e-06
GO:0030288 outer membrane-bounded periplasmic space 3.95% (3/76) 8.27 0.0 6e-06
GO:0042793 plastid transcription 5.26% (4/76) 6.36 0.0 1.3e-05
GO:0034641 cellular nitrogen compound metabolic process 36.84% (28/76) 1.43 0.0 2.3e-05
GO:0009536 plastid 23.68% (18/76) 2.0 0.0 2.4e-05
GO:0008152 metabolic process 68.42% (52/76) 0.78 0.0 2.5e-05
GO:0006807 nitrogen compound metabolic process 55.26% (42/76) 0.98 1e-06 3.1e-05
GO:0006396 RNA processing 19.74% (15/76) 2.19 1e-06 4.2e-05
GO:0042651 thylakoid membrane 11.84% (9/76) 3.14 1e-06 4.3e-05
GO:0004176 ATP-dependent peptidase activity 5.26% (4/76) 5.84 1e-06 4.3e-05
GO:0042597 periplasmic space 3.95% (3/76) 7.27 1e-06 4.4e-05
GO:0034357 photosynthetic membrane 11.84% (9/76) 3.13 1e-06 4.4e-05
GO:0004252 serine-type endopeptidase activity 7.89% (6/76) 4.09 2e-06 7e-05
GO:0008233 peptidase activity 13.16% (10/76) 2.8 2e-06 7.5e-05
GO:0009368 endopeptidase Clp complex 3.95% (3/76) 6.89 2e-06 8.5e-05
GO:0046483 heterocycle metabolic process 34.21% (26/76) 1.38 2e-06 9.3e-05
GO:0016072 rRNA metabolic process 10.53% (8/76) 3.17 3e-06 0.000124
GO:0071704 organic substance metabolic process 63.16% (48/76) 0.77 3e-06 0.000127
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 6.58% (5/76) 4.45 4e-06 0.000132
GO:0042170 plastid membrane 13.16% (10/76) 2.61 5e-06 0.000189
GO:0009535 chloroplast thylakoid membrane 10.53% (8/76) 3.05 6e-06 0.000195
GO:0055035 plastid thylakoid membrane 10.53% (8/76) 3.04 6e-06 0.000197
GO:0009658 chloroplast organization 10.53% (8/76) 3.04 6e-06 0.000197
GO:0008236 serine-type peptidase activity 7.89% (6/76) 3.73 6e-06 0.000205
GO:0017171 serine hydrolase activity 7.89% (6/76) 3.69 8e-06 0.000224
GO:0044238 primary metabolic process 56.58% (43/76) 0.83 7e-06 0.00023
GO:0006725 cellular aromatic compound metabolic process 35.53% (27/76) 1.24 9e-06 0.000256
GO:0009508 plastid chromosome 3.95% (3/76) 6.01 1.4e-05 0.000394
GO:0006364 rRNA processing 9.21% (7/76) 3.12 1.7e-05 0.000466
GO:0009507 chloroplast 17.11% (13/76) 1.99 2.1e-05 0.000564
GO:0004175 endopeptidase activity 9.21% (7/76) 3.06 2.1e-05 0.000565
GO:0043093 FtsZ-dependent cytokinesis 2.63% (2/76) 8.01 2.2e-05 0.000575
GO:0003723 RNA binding 21.05% (16/76) 1.7 2.5e-05 0.000628
GO:0019750 chloroplast localization 5.26% (4/76) 4.47 3.4e-05 0.000779
GO:0051644 plastid localization 5.26% (4/76) 4.47 3.4e-05 0.000779
GO:0005525 GTP binding 7.89% (6/76) 3.32 3.2e-05 0.000786
GO:0010207 photosystem II assembly 3.95% (3/76) 5.59 3.4e-05 0.00081
GO:0034660 ncRNA metabolic process 13.16% (10/76) 2.27 4e-05 0.000908
GO:1901360 organic cyclic compound metabolic process 35.53% (27/76) 1.11 4.6e-05 0.001026
GO:0000917 division septum assembly 2.63% (2/76) 7.42 5.6e-05 0.001121
GO:0090529 cell septum assembly 2.63% (2/76) 7.42 5.6e-05 0.001121
GO:0032561 guanyl ribonucleotide binding 7.89% (6/76) 3.19 5.3e-05 0.001141
GO:0016787 hydrolase activity 26.32% (20/76) 1.36 5.8e-05 0.001148
GO:0019001 guanyl nucleotide binding 7.89% (6/76) 3.18 5.5e-05 0.001153
GO:0042254 ribosome biogenesis 5.26% (4/76) 4.29 5.4e-05 0.001157
GO:0005488 binding 72.37% (55/76) 0.53 6.2e-05 0.001207
GO:0071344 diphosphate metabolic process 2.63% (2/76) 7.2 7.8e-05 0.001486
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 7.89% (6/76) 3.05 8.9e-05 0.00167
GO:0009543 chloroplast thylakoid lumen 3.95% (3/76) 5.1 9.5e-05 0.001715
GO:0031978 plastid thylakoid lumen 3.95% (3/76) 5.1 9.5e-05 0.001715
GO:0009840 chloroplastic endopeptidase Clp complex 2.63% (2/76) 7.01 0.000104 0.001822
GO:0009987 cellular process 73.68% (56/76) 0.5 0.000104 0.001848
GO:0003674 molecular_function 80.26% (61/76) 0.43 0.000115 0.001983
GO:0008150 biological_process 81.58% (62/76) 0.41 0.000135 0.002293
GO:0009941 chloroplast envelope 10.53% (8/76) 2.37 0.000162 0.002712
GO:0008170 N-methyltransferase activity 5.26% (4/76) 3.84 0.000184 0.003048
GO:0009451 RNA modification 9.21% (7/76) 2.55 0.000199 0.003243
GO:0009526 plastid envelope 10.53% (8/76) 2.29 0.000232 0.00373
GO:0005575 cellular_component 80.26% (61/76) 0.4 0.000265 0.004186
GO:0022613 ribonucleoprotein complex biogenesis 5.26% (4/76) 3.67 0.000289 0.004508
GO:0034470 ncRNA processing 10.53% (8/76) 2.23 0.00031 0.004768
GO:0016589 NURF complex 2.63% (2/76) 6.2 0.000334 0.004936
GO:0035076 ecdysone receptor-mediated signaling pathway 2.63% (2/76) 6.2 0.000334 0.004936
GO:1900871 chloroplast mRNA modification 2.63% (2/76) 6.2 0.000334 0.004936
GO:0003729 mRNA binding 14.47% (11/76) 1.76 0.000373 0.005435
GO:0008168 methyltransferase activity 7.89% (6/76) 2.66 0.00038 0.005457
GO:0035206 regulation of hemocyte proliferation 2.63% (2/76) 6.1 0.000385 0.005469
GO:0110165 cellular anatomical entity 78.95% (60/76) 0.39 0.000401 0.005613
GO:0016741 transferase activity, transferring one-carbon groups 7.89% (6/76) 2.61 0.00046 0.006282
GO:0016462 pyrophosphatase activity 7.89% (6/76) 2.61 0.000455 0.006294
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.89% (6/76) 2.59 0.000489 0.006602
GO:0031977 thylakoid lumen 3.95% (3/76) 4.27 0.000521 0.00695
GO:0016817 hydrolase activity, acting on acid anhydrides 7.89% (6/76) 2.54 0.000592 0.007711
GO:0044237 cellular metabolic process 52.63% (40/76) 0.63 0.000589 0.007763
GO:0010020 chloroplast fission 2.63% (2/76) 5.76 0.000624 0.007945
GO:0043572 plastid fission 2.63% (2/76) 5.76 0.000624 0.007945
GO:0009902 chloroplast relocation 3.95% (3/76) 4.17 0.000644 0.008006
GO:0051667 establishment of plastid localization 3.95% (3/76) 4.17 0.000644 0.008006
GO:1901363 heterocyclic compound binding 42.11% (32/76) 0.77 0.000667 0.008206
GO:0006351 DNA-templated transcription 5.26% (4/76) 3.33 0.000702 0.008536
GO:0071840 cellular component organization or biogenesis 32.89% (25/76) 0.92 0.000769 0.008682
GO:0051117 ATPase binding 3.95% (3/76) 4.1 0.000735 0.008747
GO:0097659 nucleic acid-templated transcription 5.26% (4/76) 3.29 0.000768 0.00876
GO:0003824 catalytic activity 51.32% (39/76) 0.64 0.000729 0.008778
GO:0000427 plastid-encoded plastid RNA polymerase complex 2.63% (2/76) 5.61 0.000765 0.00882
GO:0032259 methylation 7.89% (6/76) 2.47 0.000759 0.00885
GO:0097159 organic cyclic compound binding 42.11% (32/76) 0.76 0.000758 0.008923
GO:0043414 macromolecule methylation 6.58% (5/76) 2.78 0.000837 0.009357
GO:0031010 ISWI-type complex 2.63% (2/76) 5.42 0.001002 0.011087
GO:0010206 photosystem II repair 2.63% (2/76) 5.36 0.001087 0.0118
GO:0000935 division septum 2.63% (2/76) 5.36 0.001087 0.0118
GO:0000959 mitochondrial RNA metabolic process 6.58% (5/76) 2.68 0.001115 0.011981
GO:0016278 lysine N-methyltransferase activity 3.95% (3/76) 3.82 0.001279 0.013483
GO:0016279 protein-lysine N-methyltransferase activity 3.95% (3/76) 3.82 0.001279 0.013483
GO:0000166 nucleotide binding 22.37% (17/76) 1.14 0.001376 0.013978
GO:1901265 nucleoside phosphate binding 22.37% (17/76) 1.14 0.001376 0.013978
GO:0008237 metallopeptidase activity 3.95% (3/76) 3.8 0.001347 0.014072
GO:0042766 obsolete nucleosome mobilization 2.63% (2/76) 5.15 0.001464 0.014093
GO:0031967 organelle envelope 10.53% (8/76) 1.89 0.001428 0.014113
GO:0031975 envelope 10.53% (8/76) 1.89 0.001428 0.014113
GO:0004427 inorganic diphosphate phosphatase activity 2.63% (2/76) 5.2 0.001365 0.014119
GO:0006508 proteolysis 11.84% (9/76) 1.74 0.001457 0.014149
GO:0140657 ATP-dependent activity 9.21% (7/76) 2.07 0.001409 0.014184
GO:0061024 membrane organization 7.89% (6/76) 2.29 0.001452 0.014225
GO:0008649 rRNA methyltransferase activity 2.63% (2/76) 5.05 0.001673 0.015825
GO:0140102 catalytic activity, acting on a rRNA 2.63% (2/76) 5.05 0.001673 0.015825
GO:0015367 oxoglutarate:malate antiporter activity 1.32% (1/76) 9.01 0.001944 0.017082
GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity 1.32% (1/76) 9.01 0.001944 0.017082
GO:0004399 histidinol dehydrogenase activity 1.32% (1/76) 9.01 0.001944 0.017082
GO:0044210 'de novo' CTP biosynthetic process 1.32% (1/76) 9.01 0.001944 0.017082
GO:0004517 nitric-oxide synthase activity 1.32% (1/76) 9.01 0.001944 0.017082
GO:0070677 rRNA (cytosine-2'-O-)-methyltransferase activity 1.32% (1/76) 9.01 0.001944 0.017082
GO:0009376 HslUV protease complex 1.32% (1/76) 9.01 0.001944 0.017082
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 1.32% (1/76) 9.01 0.001944 0.017082
GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 1.32% (1/76) 9.01 0.001944 0.017082
GO:0031167 rRNA methylation 2.63% (2/76) 4.92 0.00201 0.017522
GO:0016556 mRNA modification 5.26% (4/76) 2.88 0.002178 0.018835
GO:0030091 protein repair 2.63% (2/76) 4.84 0.002252 0.019175
GO:0003676 nucleic acid binding 27.63% (21/76) 0.93 0.002243 0.019252
GO:0008276 protein methyltransferase activity 3.95% (3/76) 3.49 0.002456 0.020757
GO:0051881 regulation of mitochondrial membrane potential 2.63% (2/76) 4.76 0.002506 0.020862
GO:0030428 cell septum 2.63% (2/76) 4.76 0.002506 0.020862
GO:0009579 thylakoid 5.26% (4/76) 2.82 0.002535 0.020943
GO:0019866 organelle inner membrane 5.26% (4/76) 2.68 0.00356 0.029196
GO:0035674 tricarboxylic acid transmembrane transport 1.32% (1/76) 8.01 0.003885 0.030074
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 1.32% (1/76) 8.01 0.003885 0.030074
GO:0004636 phosphoribosyl-ATP diphosphatase activity 1.32% (1/76) 8.01 0.003885 0.030074
GO:0004019 adenylosuccinate synthase activity 1.32% (1/76) 8.01 0.003885 0.030074
GO:0006393 termination of mitochondrial transcription 1.32% (1/76) 8.01 0.003885 0.030074
GO:0000453 enzyme-directed rRNA 2'-O-methylation 1.32% (1/76) 8.01 0.003885 0.030074
GO:0061711 N(6)-L-threonylcarbamoyladenine synthase activity 1.32% (1/76) 8.01 0.003885 0.030074
GO:1902494 catalytic complex 13.16% (10/76) 1.44 0.003697 0.030093
GO:0000154 rRNA modification 2.63% (2/76) 4.42 0.003972 0.030113
GO:0030518 intracellular steroid hormone receptor signaling pathway 2.63% (2/76) 4.42 0.003972 0.030113
GO:0036094 small molecule binding 22.37% (17/76) 1.0 0.003947 0.030341
GO:0000502 proteasome complex 2.63% (2/76) 4.36 0.004302 0.03218
GO:0044271 cellular nitrogen compound biosynthetic process 13.16% (10/76) 1.41 0.004296 0.03235
GO:0034654 nucleobase-containing compound biosynthetic process 7.89% (6/76) 1.95 0.004687 0.034824
GO:0019538 protein metabolic process 25.0% (19/76) 0.89 0.0049 0.036163
GO:0005694 chromosome 6.58% (5/76) 2.18 0.005043 0.036972
GO:1900865 chloroplast RNA modification 3.95% (3/76) 3.12 0.005116 0.037259
GO:0018022 peptidyl-lysine methylation 3.95% (3/76) 3.11 0.005196 0.03735
GO:1905369 endopeptidase complex 2.63% (2/76) 4.23 0.005183 0.037499
GO:0005739 mitochondrion 13.16% (10/76) 1.36 0.005382 0.038439
GO:0044208 'de novo' AMP biosynthetic process 1.32% (1/76) 7.42 0.005822 0.039538
GO:0016793 triphosphoric monoester hydrolase activity 1.32% (1/76) 7.42 0.005822 0.039538
GO:0042794 plastid rRNA transcription 1.32% (1/76) 7.42 0.005822 0.039538
GO:0035551 protein initiator methionine removal involved in protein maturation 1.32% (1/76) 7.42 0.005822 0.039538
GO:1990229 iron-sulfur cluster assembly complex 1.32% (1/76) 7.42 0.005822 0.039538
GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation 1.32% (1/76) 7.42 0.005822 0.039538
GO:0044528 regulation of mitochondrial mRNA stability 1.32% (1/76) 7.42 0.005822 0.039538
GO:0006996 organelle organization 17.11% (13/76) 1.13 0.005645 0.040055
GO:0032774 RNA biosynthetic process 5.26% (4/76) 2.47 0.005989 0.040426
GO:0006353 DNA-templated transcription termination 2.63% (2/76) 4.05 0.006542 0.043366
GO:0016226 iron-sulfur cluster assembly 2.63% (2/76) 4.05 0.006542 0.043366
GO:0031163 metallo-sulfur cluster assembly 2.63% (2/76) 4.05 0.006542 0.043366
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.32% (1/76) 7.01 0.007755 0.046404
GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity 1.32% (1/76) 7.01 0.007755 0.046404
GO:0021517 ventral spinal cord development 1.32% (1/76) 7.01 0.007755 0.046404
GO:0048880 sensory system development 1.32% (1/76) 7.01 0.007755 0.046404
GO:0048881 mechanosensory lateral line system development 1.32% (1/76) 7.01 0.007755 0.046404
GO:0048925 lateral line system development 1.32% (1/76) 7.01 0.007755 0.046404
GO:0046086 adenosine biosynthetic process 1.32% (1/76) 7.01 0.007755 0.046404
GO:0033862 UMP kinase activity 1.32% (1/76) 7.01 0.007755 0.046404
GO:0070084 protein initiator methionine removal 1.32% (1/76) 7.01 0.007755 0.046404
GO:0002949 tRNA threonylcarbamoyladenosine modification 1.32% (1/76) 7.01 0.007755 0.046404
GO:0046168 glycerol-3-phosphate catabolic process 1.32% (1/76) 7.01 0.007755 0.046404
GO:0000719 photoreactive repair 1.32% (1/76) 7.01 0.007755 0.046404
GO:0003904 deoxyribodipyrimidine photo-lyase activity 1.32% (1/76) 7.01 0.007755 0.046404
GO:0032468 Golgi calcium ion homeostasis 1.32% (1/76) 7.01 0.007755 0.046404
GO:0032472 Golgi calcium ion transport 1.32% (1/76) 7.01 0.007755 0.046404
GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex 1.32% (1/76) 7.01 0.007755 0.046404
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 1.32% (1/76) 7.01 0.007755 0.046404
GO:0080156 mitochondrial mRNA modification 3.95% (3/76) 2.89 0.007851 0.046726
GO:0022607 cellular component assembly 14.47% (11/76) 1.19 0.00824 0.048781
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_199 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_222 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_479 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_50 0.011 Orthogroups with 8 Potato genotypes Compare
Sequences (76) (download table)

InterPro Domains

GO Terms

Family Terms