SOLTUB.AGRIA.G00000017657

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_02_0014777 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017657
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_56

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005815	microtubule organizing center	IEA	AHRD
CC	GO:0005929	cilium	None	Extended
BP	GO:0006950	response to stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
BP	GO:0009605	response to external stimulus	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	IEA	AHRD
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030182	neuron differentiation	IEA	AHRD
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
CC	GO:0042995	cell projection	None	Extended
CC	GO:0043005	neuron projection	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0048468	cell development	IEA	AHRD
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0097730	non-motile cilium	None	Extended
CC	GO:0097731	9+0 non-motile cilium	None	Extended
CC	GO:0097733	photoreceptor cell cilium	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	IEA	AHRD
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
MF	GO:0004419	hydroxymethylglutaryl-CoA lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004659	prenyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004661	protein geranylgeranyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004662	CAAX-protein geranylgeranyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0005782	peroxisomal matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0005953	CAAX-protein geranylgeranyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006551	leucine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006552	leucine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006637	acyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007584	response to nutrient	IEP	Predict GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008284	positive regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008300	isoprenoid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008318	protein prenyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009083	branched-chain amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009436	glyoxylate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010033	response to organic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0015977	carbon fixation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016042	lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016829	lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016833	oxo-acid-lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018342	protein prenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018344	protein geranylgeranylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031907	microbody lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034097	response to cytokine	IEP	Predict GO terms from Neighborhoods
BP	GO:0035383	thioester metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042214	terpene metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042277	peptide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043427	carbon fixation by 3-hydroxypropionate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0044242	cellular lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045787	positive regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046185	aldehyde catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046247	terpene catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046487	glyoxylate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046950	cellular ketone body metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046951	ketone body biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0048732	gland development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051769	regulation of nitric-oxide synthase biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051771	negative regulation of nitric-oxide synthase biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070542	response to fatty acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097354	prenylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0120227	acyl-CoA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0120252	hydrocarbon metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0120253	hydrocarbon catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901419	regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1901420	negative regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
MF	GO:1901567	fatty acid derivative binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901568	fatty acid derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901700	response to oxygen-containing compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1902224	ketone body metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905957	regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009091	RCC1/BLIP-II	22	394
IPR000408	Reg_chr_condens	126	174
IPR000408	Reg_chr_condens	22	70
IPR000408	Reg_chr_condens	182	231
IPR000408	Reg_chr_condens	339	392
IPR000408	Reg_chr_condens	74	121

External Links

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SOLTUB.AGRIA.G00000017657

Expression Profile

Co-expression Networks

Functional Annotation