SOLTUB.AGRIA.G00000017890

Description : Polygalacturonase 1 beta-like protein 1

Gene families : OG_02_0000549 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017890
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_102

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	IEA	AHRD
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009827	plant-type cell wall modification	IEA	AHRD
BP	GO:0009835	fruit ripening	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEA	AHRD
BP	GO:0045229	external encapsulating structure organization	None	Extended
CC	GO:0048046	apoplast	IEA	AHRD
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000272	polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001578	microtubule bundle formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003779	actin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005615	extracellular space	IEP	Predict GO terms from Neighborhoods
CC	GO:0005813	centrosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005815	microtubule organizing center	IEP	Predict GO terms from Neighborhoods
CC	GO:0005871	kinesin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005912	adherens junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0005915	zonula adherens	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006026	aminoglycan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006030	chitin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006032	chitin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006040	amino sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006073	cellular glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007097	nuclear migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007601	visual perception	IEP	Predict GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008569	minus-end-directed microtubule motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009044	xylan 1,4-beta-xylosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009605	response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009606	tropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009627	systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009629	response to gravity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009630	gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009741	response to brassinosteroid	IEP	Predict GO terms from Neighborhoods
BP	GO:0010091	trichome branching	IEP	Predict GO terms from Neighborhoods
BP	GO:0010202	response to low fluence red light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0010274	hydrotropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010410	hemicellulose metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0015629	actin cytoskeleton	IEP	Predict GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030247	polysaccharide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030599	pectinesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031221	arabinan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031222	arabinan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031534	minus-end directed microtubule sliding	IEP	Predict GO terms from Neighborhoods
CC	GO:0032541	cortical endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0033591	response to L-ascorbic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0034330	cell junction organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034331	cell junction maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0034332	adherens junction organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034334	adherens junction maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0043621	protein self-association	IEP	Predict GO terms from Neighborhoods
BP	GO:0043954	cellular component maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044347	cell wall polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045168	cell-cell signaling involved in cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0045216	cell-cell junction organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045217	cell-cell junction maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0045218	zonula adherens maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0045330	aspartyl esterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045493	xylan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046348	amino sugar catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046910	pectinesterase inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048629	trichome patterning	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050953	sensory perception of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051012	microtubule sliding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051647	nucleus localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051656	establishment of organelle localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090057	root radial pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090136	epithelial cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
CC	GO:0090406	pollen tube	IEP	Predict GO terms from Neighborhoods
MF	GO:0097599	xylanase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098609	cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000895	hemicellulose catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004873	BURP_dom	395	607

External Links

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SOLTUB.AGRIA.G00000017890

Expression Profile

Co-expression Networks

Functional Annotation