SOLTUB.AGRIA.G00000018051


Description : Pentatricopeptide repeat-containing protein, putative


Gene families : OG_02_0006043 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018051
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_69


Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA AHRD
CC GO:0043231 intracellular membrane-bounded organelle IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
MF GO:0003941 L-serine ammonia-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0004722 protein serine/threonine phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0006066 alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006090 pyruvate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006563 L-serine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006565 L-serine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006714 sesquiterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007131 reciprocal meiotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
BP GO:0007568 aging IEP Predict GO terms from Neighborhoods
MF GO:0008265 Mo-molybdopterin cofactor sulfurase activity IEP Predict GO terms from Neighborhoods
MF GO:0008721 D-serine ammonia-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0009000 selenocysteine lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0009039 urease activity IEP Predict GO terms from Neighborhoods
BP GO:0009069 serine family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009070 serine family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009071 serine family amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009436 glyoxylate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009441 glycolate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009687 abscisic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009688 abscisic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0014072 response to isoquinoline alkaloid IEP Predict GO terms from Neighborhoods
BP GO:0016053 organic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016106 sesquiterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016151 nickel cation binding IEP Predict GO terms from Neighborhoods
MF GO:0016594 glycine binding IEP Predict GO terms from Neighborhoods
MF GO:0016597 amino acid binding IEP Predict GO terms from Neighborhoods
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Predict GO terms from Neighborhoods
MF GO:0016783 sulfurtransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016836 hydro-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016841 ammonia-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016854 racemase and epimerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predict GO terms from Neighborhoods
MF GO:0018114 threonine racemase activity IEP Predict GO terms from Neighborhoods
BP GO:0018249 protein dehydration IEP Predict GO terms from Neighborhoods
BP GO:0018315 molybdenum incorporation into molybdenum-molybdopterin complex IEP Predict GO terms from Neighborhoods
CC GO:0019005 SCF ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0019478 D-amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019627 urea metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019842 vitamin binding IEP Predict GO terms from Neighborhoods
MF GO:0030151 molybdenum ion binding IEP Predict GO terms from Neighborhoods
MF GO:0030165 PDZ domain binding IEP Predict GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0030378 serine racemase activity IEP Predict GO terms from Neighborhoods
MF GO:0030848 threo-3-hydroxyaspartate ammonia-lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0031406 carboxylic acid binding IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
BP GO:0032006 regulation of TOR signaling IEP Predict GO terms from Neighborhoods
BP GO:0032496 response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0034308 primary alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034310 primary alcohol catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0035550 urease complex IEP Predict GO terms from Neighborhoods
BP GO:0035825 homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0036088 D-serine catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predict GO terms from Neighborhoods
BP GO:0042040 metal incorporation into metallo-molybdopterin complex IEP Predict GO terms from Neighborhoods
BP GO:0042219 cellular modified amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042866 pyruvate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0043177 organic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0043278 response to morphine IEP Predict GO terms from Neighborhoods
BP GO:0043279 response to alkaloid IEP Predict GO terms from Neighborhoods
BP GO:0043288 apocarotenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043289 apocarotenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043419 urea catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043605 cellular amide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044248 cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044282 small molecule catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045036 protein targeting to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0045037 protein import into chloroplast stroma IEP Predict GO terms from Neighborhoods
CC GO:0045177 apical part of cell IEP Predict GO terms from Neighborhoods
BP GO:0046164 alcohol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046185 aldehyde catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046296 glycolate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046394 carboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046416 D-amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046437 D-amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046487 glyoxylate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0047661 amino-acid racemase activity IEP Predict GO terms from Neighborhoods
BP GO:0051189 prosthetic group metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0065002 intracellular protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0070178 D-serine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0070179 D-serine biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Predict GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071806 protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0071941 nitrogen cycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0072596 establishment of protein localization to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0072598 protein localization to chloroplast IEP Predict GO terms from Neighborhoods
MF GO:0102867 molybdenum cofactor sulfurtransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0140527 reciprocal homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901575 organic substance catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901606 alpha-amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901616 organic hydroxy compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902644 tertiary alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902645 tertiary alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 486 514
IPR002885 Pentatricopeptide_repeat 211 240
IPR002885 Pentatricopeptide_repeat 452 480
IPR002885 Pentatricopeptide_repeat 521 550
IPR002885 Pentatricopeptide_repeat 880 902
IPR002885 Pentatricopeptide_repeat 246 275
IPR002885 Pentatricopeptide_repeat 845 869
IPR002885 Pentatricopeptide_repeat 762 796
IPR002885 Pentatricopeptide_repeat 729 755
IPR002885 Pentatricopeptide_repeat 281 314
IPR002885 Pentatricopeptide_repeat 521 553
IPR002885 Pentatricopeptide_repeat 452 481
IPR002885 Pentatricopeptide_repeat 845 873
IPR002885 Pentatricopeptide_repeat 352 385
IPR002885 Pentatricopeptide_repeat 138 164
IPR002885 Pentatricopeptide_repeat 486 516
IPR002885 Pentatricopeptide_repeat 211 245
IPR002885 Pentatricopeptide_repeat 797 831
IPR002885 Pentatricopeptide_repeat 386 407
IPR002885 Pentatricopeptide_repeat 349 397
IPR002885 Pentatricopeptide_repeat 279 327
IPR002885 Pentatricopeptide_repeat 760 808
IPR002885 Pentatricopeptide_repeat 132 163
IPR002885 Pentatricopeptide_repeat 725 750
No external refs found!