Coexpression cluster: Cluster_69 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046437 D-amino acid biosynthetic process 6.78% (4/59) 8.2 0.0 0.0
GO:0070178 D-serine metabolic process 6.78% (4/59) 8.2 0.0 0.0
GO:0070179 D-serine biosynthetic process 6.78% (4/59) 8.2 0.0 0.0
GO:0046416 D-amino acid metabolic process 6.78% (4/59) 7.56 0.0 1e-06
GO:0008721 D-serine ammonia-lyase activity 5.08% (3/59) 8.15 0.0 1.2e-05
GO:0018114 threonine racemase activity 5.08% (3/59) 8.15 0.0 1.2e-05
GO:0018249 protein dehydration 5.08% (3/59) 8.15 0.0 1.2e-05
GO:0030378 serine racemase activity 5.08% (3/59) 8.15 0.0 1.2e-05
GO:0030848 threo-3-hydroxyaspartate ammonia-lyase activity 5.08% (3/59) 8.15 0.0 1.2e-05
GO:0036088 D-serine catabolic process 5.08% (3/59) 8.15 0.0 1.2e-05
GO:0090421 embryonic meristem initiation 8.47% (5/59) 5.5 0.0 2.1e-05
GO:0016594 glycine binding 5.08% (3/59) 7.79 0.0 2.2e-05
GO:0036361 racemase activity, acting on amino acids and derivatives 5.08% (3/59) 7.79 0.0 2.2e-05
GO:0047661 amino-acid racemase activity 5.08% (3/59) 7.79 0.0 2.2e-05
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 5.08% (3/59) 7.63 0.0 2.7e-05
GO:0019478 D-amino acid catabolic process 5.08% (3/59) 7.63 0.0 2.7e-05
GO:0042866 pyruvate biosynthetic process 5.08% (3/59) 7.5 1e-06 3.5e-05
GO:0010014 meristem initiation 8.47% (5/59) 4.95 1e-06 3.9e-05
GO:0003941 L-serine ammonia-lyase activity 5.08% (3/59) 7.37 1e-06 4.2e-05
GO:0009436 glyoxylate catabolic process 5.08% (3/59) 7.15 1e-06 6e-05
GO:0042219 cellular modified amino acid catabolic process 5.08% (3/59) 7.15 1e-06 6e-05
GO:0046296 glycolate catabolic process 5.08% (3/59) 7.15 1e-06 6e-05
GO:0009441 glycolate metabolic process 5.08% (3/59) 6.96 2e-06 8.8e-05
GO:0006563 L-serine metabolic process 6.78% (4/59) 5.49 2e-06 9.4e-05
GO:0006565 L-serine catabolic process 5.08% (3/59) 6.63 4e-06 0.000164
GO:0030165 PDZ domain binding 5.08% (3/59) 6.43 6e-06 0.000245
GO:0034310 primary alcohol catabolic process 5.08% (3/59) 6.37 6e-06 0.000269
GO:0009070 serine family amino acid biosynthetic process 6.78% (4/59) 5.0 8e-06 0.000316
GO:0016841 ammonia-lyase activity 5.08% (3/59) 5.96 1.6e-05 0.000608
GO:0009071 serine family amino acid catabolic process 5.08% (3/59) 5.91 1.7e-05 0.000646
GO:0030942 endoplasmic reticulum signal peptide binding 3.39% (2/59) 8.05 2.2e-05 0.000809
GO:0009069 serine family amino acid metabolic process 6.78% (4/59) 4.58 2.5e-05 0.000821
GO:0014072 response to isoquinoline alkaloid 5.08% (3/59) 5.75 2.4e-05 0.000833
GO:0043278 response to morphine 5.08% (3/59) 5.75 2.4e-05 0.000833
GO:0046487 glyoxylate metabolic process 5.08% (3/59) 5.63 3.1e-05 0.000995
GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition 3.39% (2/59) 7.79 3.3e-05 0.001016
GO:0016840 carbon-nitrogen lyase activity 5.08% (3/59) 5.6 3.3e-05 0.001043
GO:0046185 aldehyde catabolic process 5.08% (3/59) 5.34 5.7e-05 0.001693
GO:0031017 exocrine pancreas development 3.39% (2/59) 7.05 0.0001 0.00288
GO:0019941 modification-dependent protein catabolic process 11.86% (7/59) 2.65 0.000124 0.003316
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 3.39% (2/59) 6.91 0.000122 0.003345
GO:0006511 ubiquitin-dependent protein catabolic process 11.86% (7/59) 2.65 0.00012 0.003368
GO:0051728 cell cycle switching, mitotic to meiotic cell cycle 3.39% (2/59) 6.79 0.000146 0.003823
GO:0043632 modification-dependent macromolecule catabolic process 11.86% (7/59) 2.59 0.000155 0.003944
GO:0008312 7S RNA binding 3.39% (2/59) 6.67 0.000173 0.00413
GO:0048500 signal recognition particle 3.39% (2/59) 6.67 0.000173 0.00413
GO:0060184 cell cycle switching 3.39% (2/59) 6.67 0.000173 0.00413
GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation 3.39% (2/59) 6.46 0.000232 0.005322
GO:0030851 granulocyte differentiation 3.39% (2/59) 6.46 0.000232 0.005322
GO:0046164 alcohol catabolic process 5.08% (3/59) 4.65 0.000238 0.005347
GO:0016854 racemase and epimerase activity 5.08% (3/59) 4.56 0.000285 0.006283
GO:0051603 proteolysis involved in protein catabolic process 11.86% (7/59) 2.42 0.000327 0.007067
GO:0016597 amino acid binding 5.08% (3/59) 4.43 0.000373 0.0079
GO:0030593 neutrophil chemotaxis 3.39% (2/59) 5.98 0.000462 0.009097
GO:0071621 granulocyte chemotaxis 3.39% (2/59) 5.98 0.000462 0.009097
GO:0010071 root meristem specification 3.39% (2/59) 5.98 0.000462 0.009097
GO:0031145 anaphase-promoting complex-dependent catabolic process 3.39% (2/59) 5.98 0.000462 0.009097
GO:0045177 apical part of cell 5.08% (3/59) 4.31 0.000476 0.009216
GO:0043279 response to alkaloid 5.08% (3/59) 4.28 0.000504 0.009599
GO:0097530 granulocyte migration 3.39% (2/59) 5.85 0.000555 0.010221
GO:1990266 neutrophil migration 3.39% (2/59) 5.85 0.000555 0.010221
GO:0044248 cellular catabolic process 20.34% (12/59) 1.56 0.000605 0.010952
GO:0034308 primary alcohol metabolic process 5.08% (3/59) 4.12 0.000697 0.01243
GO:0005680 anaphase-promoting complex 3.39% (2/59) 5.56 0.000826 0.014485
GO:0097529 myeloid leukocyte migration 3.39% (2/59) 5.51 0.000886 0.015304
GO:0030595 leukocyte chemotaxis 3.39% (2/59) 5.42 0.001013 0.017229
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway 5.08% (3/59) 3.9 0.001089 0.018256
GO:0044265 cellular macromolecule catabolic process 11.86% (7/59) 2.1 0.001209 0.019965
GO:0007568 aging 5.08% (3/59) 3.82 0.001288 0.02097
GO:1901616 organic hydroxy compound catabolic process 5.08% (3/59) 3.81 0.001315 0.021094
GO:0002573 myeloid leukocyte differentiation 3.39% (2/59) 5.2 0.001365 0.021594
GO:0009039 urease activity 1.69% (1/59) 9.37 0.001509 0.022601
GO:0035550 urease complex 1.69% (1/59) 9.37 0.001509 0.022601
GO:0043419 urea catabolic process 1.69% (1/59) 9.37 0.001509 0.022601
GO:0006090 pyruvate metabolic process 5.08% (3/59) 3.75 0.00148 0.023091
GO:0050900 leukocyte migration 3.39% (2/59) 5.09 0.001601 0.023659
GO:0016836 hydro-lyase activity 5.08% (3/59) 3.69 0.001659 0.024189
GO:0060326 cell chemotaxis 3.39% (2/59) 5.05 0.001684 0.024242
GO:0034399 nuclear periphery 3.39% (2/59) 5.01 0.001768 0.025138
GO:1901607 alpha-amino acid biosynthetic process 6.78% (4/59) 2.94 0.001852 0.026
GO:0030170 pyridoxal phosphate binding 5.08% (3/59) 3.62 0.001916 0.026242
GO:0031406 carboxylic acid binding 5.08% (3/59) 3.62 0.001916 0.026242
GO:0070279 vitamin B6 binding 5.08% (3/59) 3.61 0.00195 0.026384
GO:0010072 primary shoot apical meristem specification 3.39% (2/59) 4.85 0.002221 0.028346
GO:0045842 positive regulation of mitotic metaphase/anaphase transition 3.39% (2/59) 4.85 0.002221 0.028346
GO:1901970 positive regulation of mitotic sister chromatid separation 3.39% (2/59) 4.85 0.002221 0.028346
GO:0016853 isomerase activity 6.78% (4/59) 2.86 0.002294 0.028946
GO:0007420 brain development 5.08% (3/59) 3.55 0.002197 0.029032
GO:0043177 organic acid binding 5.08% (3/59) 3.51 0.002347 0.029287
GO:0042803 protein homodimerization activity 11.86% (7/59) 1.94 0.002195 0.02934
GO:0019904 protein domain specific binding 8.47% (5/59) 2.42 0.002443 0.029819
GO:1901565 organonitrogen compound catabolic process 11.86% (7/59) 1.92 0.002429 0.029971
GO:0046983 protein dimerization activity 13.56% (8/59) 1.75 0.002483 0.029982
GO:0000152 nuclear ubiquitin ligase complex 3.39% (2/59) 4.76 0.002517 0.030065
GO:0070979 protein K11-linked ubiquitination 3.39% (2/59) 4.73 0.002619 0.030958
GO:1901606 alpha-amino acid catabolic process 5.08% (3/59) 3.43 0.002749 0.032154
GO:0005829 cytosol 28.81% (17/59) 1.02 0.002853 0.033036
GO:0048829 root cap development 3.39% (2/59) 4.64 0.002937 0.03366
GO:0032496 response to lipopolysaccharide 5.08% (3/59) 3.39 0.003009 0.03413
GO:0008652 cellular amino acid biosynthetic process 6.78% (4/59) 2.72 0.003241 0.036034
GO:0045840 positive regulation of mitotic nuclear division 3.39% (2/59) 4.56 0.003273 0.036038
GO:0072329 monocarboxylic acid catabolic process 5.08% (3/59) 3.35 0.003237 0.036348
GO:0009063 cellular amino acid catabolic process 5.08% (3/59) 3.31 0.003475 0.037887
GO:0009056 catabolic process 20.34% (12/59) 1.26 0.003619 0.039076
GO:0009937 regulation of gibberellic acid mediated signaling pathway 5.08% (3/59) 3.28 0.003724 0.039825
GO:1901575 organic substance catabolic process 18.64% (11/59) 1.32 0.003809 0.040358
GO:0005048 signal sequence binding 3.39% (2/59) 4.42 0.003996 0.041551
GO:0006081 cellular aldehyde metabolic process 5.08% (3/59) 3.24 0.003983 0.041803
GO:1902101 positive regulation of metaphase/anaphase transition of cell cycle 3.39% (2/59) 4.39 0.004123 0.042093
GO:1905820 positive regulation of chromosome separation 3.39% (2/59) 4.39 0.004123 0.042093
GO:0051446 positive regulation of meiotic cell cycle 3.39% (2/59) 4.37 0.004252 0.042633
GO:0140535 intracellular protein-containing complex 10.17% (6/59) 1.97 0.004222 0.042715
GO:2001168 positive regulation of histone H2B ubiquitination 1.69% (1/59) 7.79 0.004522 0.044935
GO:0032991 protein-containing complex 25.42% (15/59) 1.04 0.004565 0.044969
GO:0006508 proteolysis 11.86% (7/59) 1.74 0.004744 0.046327
GO:0006896 Golgi to vacuole transport 3.39% (2/59) 4.28 0.004786 0.046333
GO:0006575 cellular modified amino acid metabolic process 5.08% (3/59) 3.14 0.004886 0.046895
GO:0042802 identical protein binding 18.64% (11/59) 1.28 0.00493 0.046919
GO:0000151 ubiquitin ligase complex 6.78% (4/59) 2.54 0.005017 0.047345
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_70 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_82 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_96 0.034 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_114 0.017 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_126 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_145 0.017 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_175 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_176 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_180 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_184 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_202 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_206 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_222 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_229 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_236 0.036 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_248 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_250 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_260 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_264 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_321 0.017 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_28 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_34 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_44 0.019 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_54 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (59) (download table)

InterPro Domains

GO Terms

Family Terms