SOLTUB.AGRIA.G00000018108

Description : Cysteine--tRNA ligase

Gene families : OG_02_0009108 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018108
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_106

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006417	regulation of translation	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0007006	mitochondrial membrane organization	None	Extended
BP	GO:0007007	inner mitochondrial membrane organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010197	polar nucleus fusion	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016874	ligase activity	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042407	cristae formation	IEA	AHRD
BP	GO:0043067	regulation of programmed cell death	IEA	AHRD
MF	GO:0043167	ion binding	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0000722	telomere maintenance via recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000723	telomere maintenance	IEP	Predict GO terms from Neighborhoods
CC	GO:0000781	chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005657	replication fork	IEP	Predict GO terms from Neighborhoods
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006312	mitotic recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006620	post-translational protein targeting to endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0010521	telomerase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017116	single-stranded DNA helicase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030656	regulation of vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031297	replication fork processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032200	telomere organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032205	negative regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032210	regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032211	negative regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Predict GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043139	5'-3' DNA helicase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0043529	GET complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0043596	nuclear replication fork	IEP	Predict GO terms from Neighborhoods
BP	GO:0044806	G-quadruplex DNA unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Predict GO terms from Neighborhoods
BP	GO:0045048	protein insertion into ER membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046137	negative regulation of vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051205	protein insertion into membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0051880	G-quadruplex DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0061995	ATP-dependent protein-DNA complex displacement activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0071932	replication fork reversal	IEP	Predict GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0097046	replication fork progression beyond termination site	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0140083	ATP-dependent protein-DNA unloading activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0140445	chromosome, telomeric repeat region	IEP	Predict GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904357	negative regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:2000082	regulation of L-ascorbic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000279	negative regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000621	regulation of DNA replication termination	IEP	Predict GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009080	tRNAsynth_Ia_anticodon-bd	278	424
IPR032678	tRNA-synt_1_cat_dom	133	231
IPR032678	tRNA-synt_1_cat_dom	30	109

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SOLTUB.AGRIA.G00000018108

Expression Profile

Co-expression Networks

Functional Annotation