SOLTUB.AGRIA.G00000018416

Description : dicer-like 3

Gene families : OG_02_0003409 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018416
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_17

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	IEA	AHRD
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	IEA	AHRD
BP	GO:0009790	embryo development	IEA	AHRD
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEA	AHRD
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016441	post-transcriptional gene silencing	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEA	AHRD
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030182	neuron differentiation	IEA	AHRD
BP	GO:0030422	siRNA processing	IEA	AHRD
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	IEA	AHRD
BP	GO:0035194	post-transcriptional gene silencing by RNA	None	Extended
BP	GO:0035196	miRNA processing	IEA	AHRD
BP	GO:0035295	tube development	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	IEA	AHRD
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048608	reproductive structure development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050767	regulation of neurogenesis	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	IEA	AHRD
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051960	regulation of nervous system development	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060284	regulation of cell development	None	Extended
BP	GO:0060429	epithelium development	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0070918	small regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002064	epithelial cell development	IEP	Predict GO terms from Neighborhoods
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005275	amine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005372	water transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0007289	spermatid nucleus differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007389	pattern specification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007596	blood coagulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007599	hemostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008494	translation activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008793	aromatic-amino-acid:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009414	response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009415	response to water	IEP	Predict GO terms from Neighborhoods
BP	GO:0009606	tropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009629	response to gravity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009630	gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009639	response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009641	shade avoidance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009642	response to light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009646	response to absence of light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009683	indoleacetic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009723	response to ethylene	IEP	Predict GO terms from Neighborhoods
BP	GO:0009735	response to cytokinin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009743	response to carbohydrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0009744	response to sucrose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009850	auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009851	auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009900	dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009901	anther dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009914	hormone transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009926	auxin polar transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009958	positive gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0010051	xylem and phloem pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010074	maintenance of meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010078	maintenance of root meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010087	phloem or xylem histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010252	auxin homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0010326	methionine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010817	regulation of hormone levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0015200	methylammonium transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015204	urea transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015250	water channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015840	urea transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016829	lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016831	carboxy-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019755	one-carbon compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0019827	stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030307	positive regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0030707	ovarian follicle cell development	IEP	Predict GO terms from Neighborhoods
MF	GO:0031370	eukaryotic initiation factor 4G binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031404	chloride ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031952	regulation of protein autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032350	regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032586	protein storage vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034285	response to disaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0034754	cellular hormone metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034973	Sid2-Mob1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035265	organ growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0035330	regulation of hippo signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042445	hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042446	hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042807	central vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0043562	cellular response to nitrogen levels	IEP	Predict GO terms from Neighborhoods
CC	GO:0043674	columella	IEP	Predict GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045069	regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045070	positive regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046983	protein dimerization activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047312	L-phenylalanine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047434	indolepyruvate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047654	alliin lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048262	determination of dorsal/ventral asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0048364	root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048438	floral whorl development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048467	gynoecium development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048527	lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048528	post-embryonic root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048599	oocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048826	cotyledon morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050048	L-leucine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050817	coagulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051341	regulation of oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051354	negative regulation of oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060212	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060918	auxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Predict GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070546	L-phenylalanine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070547	L-tyrosine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070548	L-glutamine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080098	L-tyrosine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080099	L-methionine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080100	L-glutamine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080170	hydrogen peroxide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090354	regulation of auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090696	post-embryonic plant organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0098727	maintenance of cell number	IEP	Predict GO terms from Neighborhoods
BP	GO:0099402	plant organ development	IEP	Predict GO terms from Neighborhoods
MF	GO:0103075	indole-3-pyruvate monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1905615	positive regulation of developmental vegetative growth	IEP	Predict GO terms from Neighborhoods
CC	GO:1990124	messenger ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000024	regulation of leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000468	regulation of peroxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000469	negative regulation of peroxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000622	regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods
BP	GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036389	RNase_III_sf	45	181
IPR000999	RNase_III_dom	86	162

External Links

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SOLTUB.AGRIA.G00000018416

Expression Profile

Co-expression Networks

Functional Annotation