Coexpression cluster: Cluster_17 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008793 aromatic-amino-acid:2-oxoglutarate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0047312 L-phenylalanine:pyruvate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0080097 L-tryptophan:pyruvate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0080098 L-tyrosine:pyruvate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0080099 L-methionine:2-oxoglutarate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0080100 L-glutamine:2-oxoglutarate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity 4.13% (5/121) 6.41 0.0 0.0
GO:0050362 L-tryptophan:2-oxoglutarate aminotransferase activity 4.13% (5/121) 6.34 0.0 1e-06
GO:0070546 L-phenylalanine aminotransferase activity 4.13% (5/121) 6.34 0.0 1e-06
GO:0009683 indoleacetic acid metabolic process 5.79% (7/121) 4.82 0.0 1e-06
GO:0009851 auxin biosynthetic process 5.79% (7/121) 4.82 0.0 1e-06
GO:0070529 L-tryptophan aminotransferase activity 4.13% (5/121) 6.27 0.0 1e-06
GO:0070548 L-glutamine aminotransferase activity 4.13% (5/121) 6.2 0.0 1e-06
GO:0050048 L-leucine:2-oxoglutarate aminotransferase activity 4.13% (5/121) 6.13 0.0 1e-06
GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity 4.13% (5/121) 5.96 0.0 1e-06
GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity 4.13% (5/121) 5.96 0.0 1e-06
GO:0047635 alanine-oxo-acid transaminase activity 4.13% (5/121) 5.96 0.0 1e-06
GO:0010326 methionine-oxo-acid transaminase activity 4.13% (5/121) 5.9 0.0 1e-06
GO:0070547 L-tyrosine aminotransferase activity 4.13% (5/121) 5.9 0.0 1e-06
GO:0009684 indoleacetic acid biosynthetic process 5.79% (7/121) 5.03 0.0 3e-06
GO:0031063 regulation of histone deacetylation 4.13% (5/121) 5.45 0.0 7e-06
GO:0002021 response to dietary excess 3.31% (4/121) 6.17 0.0 1.4e-05
GO:0045572 positive regulation of imaginal disc growth 3.31% (4/121) 6.17 0.0 1.4e-05
GO:0050872 white fat cell differentiation 3.31% (4/121) 6.17 0.0 1.4e-05
GO:0060613 fat pad development 3.31% (4/121) 6.17 0.0 1.4e-05
GO:0045570 regulation of imaginal disc growth 3.31% (4/121) 6.09 0.0 1.7e-05
GO:0008587 imaginal disc-derived wing margin morphogenesis 3.31% (4/121) 5.88 1e-06 3.1e-05
GO:0031065 positive regulation of histone deacetylation 3.31% (4/121) 5.75 1e-06 4.1e-05
GO:0090311 regulation of protein deacetylation 4.13% (5/121) 4.85 1e-06 4.3e-05
GO:0090312 positive regulation of protein deacetylation 3.31% (4/121) 5.69 1e-06 4.7e-05
GO:0009850 auxin metabolic process 5.79% (7/121) 3.55 3e-06 0.00011
GO:0070050 neuron cellular homeostasis 3.31% (4/121) 5.29 3e-06 0.000141
GO:0008483 transaminase activity 4.13% (5/121) 4.45 4e-06 0.000146
GO:0016769 transferase activity, transferring nitrogenous groups 4.13% (5/121) 4.43 4e-06 0.000151
GO:0060612 adipose tissue development 3.31% (4/121) 5.21 4e-06 0.000164
GO:0022416 chaeta development 3.31% (4/121) 5.17 5e-06 0.00017
GO:0061448 connective tissue development 3.31% (4/121) 5.17 5e-06 0.00017
GO:0080022 primary root development 5.79% (7/121) 3.42 5e-06 0.000176
GO:0045747 positive regulation of Notch signaling pathway 3.31% (4/121) 5.13 5e-06 0.00018
GO:0090207 regulation of triglyceride metabolic process 3.31% (4/121) 5.13 5e-06 0.00018
GO:0042461 photoreceptor cell development 3.31% (4/121) 5.09 6e-06 0.000196
GO:0046329 negative regulation of JNK cascade 3.31% (4/121) 5.01 7e-06 0.000236
GO:0042446 hormone biosynthetic process 6.61% (8/121) 2.99 9e-06 0.000269
GO:0008022 protein C-terminus binding 4.96% (6/121) 3.64 1e-05 0.000297
GO:0000122 negative regulation of transcription by RNA polymerase II 7.44% (9/121) 2.71 1e-05 0.000316
GO:0045444 fat cell differentiation 3.31% (4/121) 4.88 1.1e-05 0.000317
GO:0016846 carbon-sulfur lyase activity 4.13% (5/121) 4.09 1.2e-05 0.000349
GO:0048527 lateral root development 6.61% (8/121) 2.91 1.3e-05 0.000363
GO:0001835 blastocyst hatching 3.31% (4/121) 4.78 1.4e-05 0.000366
GO:0035188 hatching 3.31% (4/121) 4.78 1.4e-05 0.000366
GO:0071684 organism emergence from protective structure 3.31% (4/121) 4.78 1.4e-05 0.000366
GO:0048467 gynoecium development 4.13% (5/121) 4.06 1.3e-05 0.000371
GO:0043627 response to estrogen 3.31% (4/121) 4.75 1.5e-05 0.000384
GO:0005819 spindle 5.79% (7/121) 3.15 1.5e-05 0.000387
GO:0042435 indole-containing compound biosynthetic process 5.79% (7/121) 3.14 1.6e-05 0.000392
GO:0008013 beta-catenin binding 3.31% (4/121) 4.72 1.7e-05 0.000402
GO:0032873 negative regulation of stress-activated MAPK cascade 3.31% (4/121) 4.69 1.8e-05 0.000421
GO:0070303 negative regulation of stress-activated protein kinase signaling cascade 3.31% (4/121) 4.69 1.8e-05 0.000421
GO:0048528 post-embryonic root development 6.61% (8/121) 2.81 2.1e-05 0.000478
GO:0007605 sensory perception of sound 3.31% (4/121) 4.61 2.3e-05 0.000505
GO:0050954 sensory perception of mechanical stimulus 3.31% (4/121) 4.61 2.3e-05 0.000505
GO:0009723 response to ethylene 8.26% (10/121) 2.39 2.4e-05 0.000521
GO:0090696 post-embryonic plant organ development 6.61% (8/121) 2.73 3e-05 0.000651
GO:0008593 regulation of Notch signaling pathway 3.31% (4/121) 4.45 3.5e-05 0.000737
GO:0034754 cellular hormone metabolic process 6.61% (8/121) 2.68 3.8e-05 0.000796
GO:0046328 regulation of JNK cascade 3.31% (4/121) 4.31 5.1e-05 0.001049
GO:0048438 floral whorl development 4.13% (5/121) 3.64 5.5e-05 0.001111
GO:0043524 negative regulation of neuron apoptotic process 3.31% (4/121) 4.27 5.8e-05 0.001147
GO:0042058 regulation of epidermal growth factor receptor signaling pathway 3.31% (4/121) 4.23 6.5e-05 0.001269
GO:0017053 transcription repressor complex 3.31% (4/121) 4.17 7.6e-05 0.001477
GO:1901184 regulation of ERBB signaling pathway 3.31% (4/121) 4.11 9e-05 0.001685
GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.48% (3/121) 5.11 9e-05 0.001708
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2.48% (3/121) 5.06 0.0001 0.0018
GO:0010078 maintenance of root meristem identity 4.13% (5/121) 3.46 9.8e-05 0.0018
GO:0043562 cellular response to nitrogen levels 4.13% (5/121) 3.46 9.8e-05 0.0018
GO:0010588 cotyledon vascular tissue pattern formation 4.13% (5/121) 3.43 0.000108 0.001927
GO:0048545 response to steroid hormone 4.13% (5/121) 3.4 0.000119 0.002088
GO:0035264 multicellular organism growth 3.31% (4/121) 4.0 0.000121 0.002099
GO:0042430 indole-containing compound metabolic process 5.79% (7/121) 2.68 0.000123 0.002106
GO:0005700 polytene chromosome 3.31% (4/121) 3.98 0.000127 0.002146
GO:0047485 protein N-terminus binding 3.31% (4/121) 3.96 0.000133 0.002222
GO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.65% (2/121) 6.75 0.000141 0.002335
GO:0009641 shade avoidance 4.13% (5/121) 3.32 0.000155 0.0025
GO:0030170 pyridoxal phosphate binding 4.13% (5/121) 3.32 0.000155 0.0025
GO:0070279 vitamin B6 binding 4.13% (5/121) 3.31 0.00016 0.002543
GO:0090263 positive regulation of canonical Wnt signaling pathway 3.31% (4/121) 3.88 0.000167 0.002624
GO:0009958 positive gravitropism 4.13% (5/121) 3.27 0.000184 0.002859
GO:2000469 negative regulation of peroxidase activity 2.48% (3/121) 4.75 0.000192 0.00295
GO:0007289 spermatid nucleus differentiation 1.65% (2/121) 6.53 0.000198 0.003006
GO:2000468 regulation of peroxidase activity 2.48% (3/121) 4.71 0.000208 0.003098
GO:0009886 post-embryonic animal morphogenesis 3.31% (4/121) 3.8 0.000206 0.003102
GO:0000118 histone deacetylase complex 3.31% (4/121) 3.75 0.000233 0.003428
GO:0031404 chloride ion binding 1.65% (2/121) 6.34 0.000263 0.003787
GO:0047654 alliin lyase activity 1.65% (2/121) 6.34 0.000263 0.003787
GO:0030177 positive regulation of Wnt signaling pathway 3.31% (4/121) 3.68 0.000283 0.004032
GO:0072686 mitotic spindle 3.31% (4/121) 3.65 0.000305 0.0043
GO:0007423 sensory organ development 3.31% (4/121) 3.62 0.000328 0.004533
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.48% (3/121) 4.49 0.000326 0.004553
GO:0048666 neuron development 3.31% (4/121) 3.61 0.00034 0.004652
GO:0043409 negative regulation of MAPK cascade 3.31% (4/121) 3.59 0.000353 0.004726
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2.48% (3/121) 4.46 0.000349 0.004729
GO:0045927 positive regulation of growth 5.79% (7/121) 2.4 0.000383 0.00509
GO:0051354 negative regulation of oxidoreductase activity 2.48% (3/121) 4.4 0.000399 0.005239
GO:1901215 negative regulation of neuron death 3.31% (4/121) 3.53 0.000419 0.005458
GO:0032872 regulation of stress-activated MAPK cascade 3.31% (4/121) 3.52 0.000434 0.005591
GO:0031331 positive regulation of cellular catabolic process 5.79% (7/121) 2.35 0.000484 0.006177
GO:2000622 regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.65% (2/121) 5.88 0.000513 0.006495
GO:0043523 regulation of neuron apoptotic process 3.31% (4/121) 3.44 0.000527 0.006609
GO:0060249 anatomical structure homeostasis 3.31% (4/121) 3.42 0.000561 0.006973
GO:0070302 regulation of stress-activated protein kinase signaling cascade 3.31% (4/121) 3.39 0.000597 0.007349
GO:0009926 auxin polar transport 4.13% (5/121) 2.88 0.000619 0.007483
GO:0031370 eukaryotic initiation factor 4G binding 1.65% (2/121) 5.75 0.000615 0.007497
GO:0048639 positive regulation of developmental growth 4.13% (5/121) 2.85 0.000685 0.00821
GO:0047434 indolepyruvate decarboxylase activity 1.65% (2/121) 5.64 0.000725 0.008535
GO:0103075 indole-3-pyruvate monooxygenase activity 1.65% (2/121) 5.64 0.000725 0.008535
GO:0007596 blood coagulation 1.65% (2/121) 5.53 0.000844 0.009523
GO:0007599 hemostasis 1.65% (2/121) 5.53 0.000844 0.009523
GO:0050817 coagulation 1.65% (2/121) 5.53 0.000844 0.009523
GO:0007600 sensory perception 3.31% (4/121) 3.27 0.000823 0.009602
GO:0019842 vitamin binding 4.13% (5/121) 2.79 0.000833 0.009645
GO:0042445 hormone metabolic process 6.61% (8/121) 2.0 0.000945 0.010569
GO:0060828 regulation of canonical Wnt signaling pathway 3.31% (4/121) 3.17 0.001075 0.011928
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 10.74% (13/121) 1.42 0.00119 0.013099
GO:0031047 gene silencing by RNA 4.13% (5/121) 2.66 0.001221 0.013227
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process 3.31% (4/121) 3.12 0.001219 0.013313
GO:0003714 transcription corepressor activity 3.31% (4/121) 3.1 0.001281 0.013762
GO:0016829 lyase activity 7.44% (9/121) 1.77 0.001395 0.014875
GO:0048599 oocyte development 1.65% (2/121) 5.17 0.001408 0.01489
GO:0009896 positive regulation of catabolic process 5.79% (7/121) 2.05 0.00162 0.017008
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process 3.31% (4/121) 2.98 0.001734 0.018055
GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening 1.65% (2/121) 4.94 0.00192 0.01955
GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 1.65% (2/121) 4.94 0.00192 0.01955
GO:0043408 regulation of MAPK cascade 4.13% (5/121) 2.52 0.001898 0.019619
GO:0019827 stem cell population maintenance 5.79% (7/121) 1.97 0.002209 0.02232
GO:0098727 maintenance of cell number 5.79% (7/121) 1.95 0.002385 0.023742
GO:0048513 animal organ development 8.26% (10/121) 1.55 0.002375 0.02382
GO:0051341 regulation of oxidoreductase activity 2.48% (3/121) 3.49 0.002456 0.024271
GO:1901214 regulation of neuron death 3.31% (4/121) 2.83 0.002529 0.024814
GO:0060918 auxin transport 4.13% (5/121) 2.4 0.002663 0.025942
GO:0008494 translation activator activity 1.65% (2/121) 4.69 0.002721 0.026318
GO:0031058 positive regulation of histone modification 3.31% (4/121) 2.77 0.002896 0.027815
GO:0048601 oocyte morphogenesis 0.83% (1/121) 8.34 0.003096 0.028708
GO:0060278 regulation of ovulation 0.83% (1/121) 8.34 0.003096 0.028708
GO:0060280 negative regulation of ovulation 0.83% (1/121) 8.34 0.003096 0.028708
GO:0140610 RNA sequestering activity 0.83% (1/121) 8.34 0.003096 0.028708
GO:1901800 positive regulation of proteasomal protein catabolic process 3.31% (4/121) 2.74 0.003122 0.028757
GO:0010074 maintenance of meristem identity 4.96% (6/121) 2.09 0.003037 0.028956
GO:0019010 farnesoic acid O-methyltransferase activity 1.65% (2/121) 4.58 0.003171 0.029011
GO:0048364 root development 8.26% (10/121) 1.47 0.003437 0.031232
GO:0030111 regulation of Wnt signaling pathway 3.31% (4/121) 2.7 0.003483 0.031436
GO:0009900 dehiscence 3.31% (4/121) 2.66 0.00387 0.034704
GO:1990124 messenger ribonucleoprotein complex 1.65% (2/121) 4.43 0.003906 0.034796
GO:0031056 regulation of histone modification 4.13% (5/121) 2.26 0.00407 0.03602
GO:0009888 tissue development 9.09% (11/121) 1.35 0.004168 0.036407
GO:0030749 loganate O-methyltransferase activity 1.65% (2/121) 4.38 0.004167 0.036638
GO:0009630 gravitropism 4.13% (5/121) 2.24 0.004384 0.038047
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 3.31% (4/121) 2.59 0.004505 0.038854
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process 3.31% (4/121) 2.58 0.004655 0.039894
GO:0035194 post-transcriptional gene silencing by RNA 2.48% (3/121) 3.14 0.004908 0.041535
GO:0016831 carboxy-lyase activity 2.48% (3/121) 3.14 0.004908 0.041535
GO:0051253 negative regulation of RNA metabolic process 9.09% (11/121) 1.31 0.004978 0.041861
GO:0010256 endomembrane system organization 1.65% (2/121) 4.13 0.005897 0.048982
GO:0072330 monocarboxylic acid biosynthetic process 5.79% (7/121) 1.71 0.005882 0.049165
GO:0010917 negative regulation of mitochondrial membrane potential 0.83% (1/121) 7.34 0.006182 0.049526
GO:0045837 negative regulation of membrane potential 0.83% (1/121) 7.34 0.006182 0.049526
GO:0047254 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D-glucosyltransferase activity 0.83% (1/121) 7.34 0.006182 0.049526
GO:0051078 meiotic nuclear membrane disassembly 0.83% (1/121) 7.34 0.006182 0.049526
GO:0062104 pumilio-response element binding 0.83% (1/121) 7.34 0.006182 0.049526
GO:0036158 outer dynein arm assembly 0.83% (1/121) 7.34 0.006182 0.049526
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_21 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_47 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_48 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_54 0.018 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_55 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_58 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_84 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_85 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_92 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_101 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_102 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_107 0.036 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_114 0.019 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_131 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_148 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_166 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_180 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_198 0.019 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_201 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_212 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_213 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_270 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_298 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_323 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_345 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_448 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_7 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_13 0.015 Orthogroups with 8 Potato genotypes Compare
Sequences (121) (download table)

InterPro Domains

GO Terms

Family Terms