SOLTUB.AGRIA.G00000018522

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_02_0019727 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018522
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_155

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IEA	AHRD
CC	GO:0001650	fibrillar center	IEA	AHRD
CC	GO:0001750	photoreceptor outer segment	IEA	AHRD
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEA	AHRD
BP	GO:0003008	system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	AHRD
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
CC	GO:0005813	centrosome	IEA	AHRD
CC	GO:0005815	microtubule organizing center	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005929	cilium	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007018	microtubule-based movement	None	Extended
BP	GO:0007600	sensory perception	None	Extended
BP	GO:0007601	visual perception	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0008589	regulation of smoothened signaling pathway	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009649	entrainment of circadian clock	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
MF	GO:0009881	photoreceptor activity	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010224	response to UV-B	IEA	AHRD
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0010970	transport along microtubule	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	AHRD
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030031	cell projection assembly	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0030705	cytoskeleton-dependent intracellular transport	None	Extended
BP	GO:0031503	protein-containing complex localization	None	Extended
CC	GO:0031514	motile cilium	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
CC	GO:0036064	ciliary basal body	IEA	AHRD
CC	GO:0036126	sperm flagellum	IEA	AHRD
MF	GO:0038023	signaling receptor activity	None	Extended
BP	GO:0042073	intraciliary transport	IEA	AHRD
BP	GO:0042461	photoreceptor cell development	None	Extended
BP	GO:0042462	eye photoreceptor cell development	IEA	AHRD
BP	GO:0042752	regulation of circadian rhythm	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044782	cilium organization	None	Extended
BP	GO:0045879	negative regulation of smoothened signaling pathway	IEA	AHRD
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048666	neuron development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050877	nervous system process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0050953	sensory perception of light stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060042	retina morphogenesis in camera-type eye	IEA	AHRD
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0060271	cilium assembly	IEA	AHRD
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0097729	9+2 motile cilium	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
BP	GO:0099111	microtubule-based transport	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120031	plasma membrane bounded cell projection assembly	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	None	Extended
CC	GO:0120206	photoreceptor distal connecting cilium	IEA	AHRD
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1903047	mitotic cell cycle process	IEA	AHRD

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002683	negative regulation of immune system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0007276	gamete generation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009527	plastid outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0009707	chloroplast outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Predict GO terms from Neighborhoods
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010941	regulation of cell death	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
BP	GO:0015695	organic cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015805	S-adenosyl-L-methionine transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034051	negative regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0043067	regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043069	negative regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0045824	negative regulation of innate immune response	IEP	Predict GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050777	negative regulation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072348	sulfur compound transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1900424	regulation of defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:1900425	negative regulation of defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000408	Reg_chr_condens	142	191
IPR000408	Reg_chr_condens	352	382
IPR000408	Reg_chr_condens	92	139
IPR000408	Reg_chr_condens	40	85
IPR000408	Reg_chr_condens	246	295
IPR000408	Reg_chr_condens	298	347
IPR000408	Reg_chr_condens	194	243
IPR009091	RCC1/BLIP-II	139	382

External Links

No external refs found!

SOLTUB.AGRIA.G00000018522

Expression Profile

Co-expression Networks

Functional Annotation